A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in monocotyledons (Q33921330)

30 July 2017

title

A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in monocotyledons (English)

1 reference

30 July 2017

1 reference

1 reference

Wolf Eiserhardt

3

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Nora Scarcelli

Nora Scarcelli

1

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Urs A Treier

Urs A Treier

4

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Yves Vigouroux

Yves Vigouroux

7

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Jean-Christophe Pintaud

8

Jean-Christophe Pintaud

1 reference

30 July 2017

Adeline Barnaud

2

1 reference

30 July 2017

Marie Seveno

5

1 reference

30 July 2017

Amélie d'Anfray

6

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30 July 2017

language of work or name

English

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publication date

26 May 2011

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30 July 2017

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30 July 2017

volume

6

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30 July 2017

issue

5

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30 July 2017

page(s)

e19954

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Creative Commons Attribution 4.0 International

30 July 2017

copyright license

start time

26 May 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis

5 July 2018

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Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III

5 July 2018

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Stem architecture in Eleocharis subgenus Limnochloa (Cyperaceae): Evidence of dynamic morphological evolution in a group of pantropical sedges

5 July 2018

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The chloroplast genome of Anomochloa marantoidea (Anomochlooideae; Poaceae) comprises a mixture of grass-like and unique features

5 July 2018

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The complete chloroplast genome of tall fescue (Lolium arundinaceum; Poaceae) and comparison of whole plastomes from the family Poaceae.

5 July 2018

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The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

5 July 2018

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Intraspecific inversions pose a challenge for the trnH-psbA plant DNA barcode

5 July 2018

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Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals ten major lineages and low rate of molecular divergence

5 July 2018

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A classification of the Chloridoideae (Poaceae) based on multi-gene phylogenetic trees

5 July 2018

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Implications of the plastid genome sequence of typha (typhaceae, poales) for understanding genome evolution in poaceae

5 July 2018

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The Complete Chloroplast Genome of Coix lacryma-jobi and a Comparative Molecular Evolutionary Analysis of Plastomes in Cereals

5 July 2018

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Floral convergence in Oncidiinae (Cymbidieae; Orchidaceae): an expanded concept of Gomesa and a new genus Nohawilliamsia

5 July 2018

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How many loci does it take to DNA barcode a crocus?

5 July 2018

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The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes

5 July 2018

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Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms.

5 July 2018

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Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

5 July 2018

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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

5 July 2018

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Pattern and timing of diversification in Yucca (Agavaceae): specialized pollination does not escalate rates of diversification

5 July 2018

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Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)

5 July 2018

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Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

A database of PCR primers for the chloroplast genomes of higher plants

5 July 2018

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Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

Sympatric speciation in palms on an oceanic island

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

Use of DNA barcodes to identify flowering plants

5 July 2018

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Widespread occurrence of small inversions in the chloroplast genomes of land plants.

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

Whole chloroplast genome comparison of rice, maize, and wheat: implications for chloroplast gene diversification and phylogeny of cereals

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

Primer3 on the WWW for general users and for biologist programmers

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

5 July 2018

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Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

Ninety extra nucleotide in ndhF gene of tobacco chloroplast DNA: a summary of revisions to the 1986 genome sequence

5 July 2018

1 reference

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Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

Universal primers for amplification of three non-coding regions of chloroplast DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102674

Phylogenetic Hypotheses for the Monocotyledons Constructed from rbcL Sequence Data

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

Molecular Phylogeny of Typhonium sensu lato and Its Allied Genera in the Tribe Areae of the Subfamily Aroideae (Araceae) Based on Sequences of Six Chloroplast Regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

Livistona palms in Australia: ancient relics or opportunistic immigrants?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

Species Delimitations and Phylogenetic Relationships within the Fully Myco-heterotrophic Hexalectris (Orchidaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

A new set of universal de novo sequencing primers for extensive coverage of noncoding chloroplast DNA: new opportunities for phylogenetic studies and cpSSR discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

Hairpins create minute inversions in non-coding regions of chloroplast DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

Chloroplast microsatellites: new tools for studies in plant ecology and evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

Phylogenetics of Dioscoreales based on combined analyses of morphological and molecular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

A new subfamily classification of the palm family (Arecaceae): evidence from plastid DNA phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

Mid-Tertiary dispersal, not Gondwanan vicariance explains distribution patterns in the wax palm subfamily (Ceroxyloideae: Arecaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

The Evolution of Non-Coding Chloroplast DNA and Its Application in Plant Systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

The age of the grasses and clusters of origins of C4photosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019954

Use of cpSSRs for the characterisation of yam phylogeny in Benin

21 January 2018

1 reference

12 December 2020

Molecular evolution of a plastid tandem repeat locus in an orchid lineage

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12 December 2020

Fine-scale phylogeographical analysis of Mediterranean Anacamptis palustris (Orchidaceae) populations based on chloroplast minisatellite and microsatellite variation

1 reference

12 December 2020

Molecular phylogeny of monocotyledons inferred from combined analysis of plastid matK and rbcL gene sequences

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0019954

Identifiers

DOI

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30 July 2017

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30 July 2017

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