Comparison of the protein-protein interfaces in the p53-DNA crystal structures: towards elucidation of the biological interface (Q33932508)

30 July 2017

Comparison of the protein-protein interfaces in the p53-DNA crystal structures: towards elucidation of the biological interface (English)

1 reference

30 July 2017

1 reference

1

1 reference

30 July 2017

6

Ruth Nussinov

1 reference

30 July 2017

2

Yongping Pan

1 reference

PubMed ID

15738397

30 July 2017

R Babu Venkataraghavan

series ordinal

4

object named as

R Babu Venkataraghavan

1 reference

30 July 2017

5

Arnold J Levine

1 reference

30 July 2017

K Gunasekaran

3

1 reference

PubMed ID

15738397

30 July 2017

language of work or name

English

0 references

publication date

28 February 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

1 reference

30 July 2017

102

1 reference

30 July 2017

11

1 reference

30 July 2017

3988-3993

1 reference

An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Crystal structure of a superstable mutant of human p53 core domain. Insights into the mechanism of rescuing oncogenic mutations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Insufficiently dehydrated hydrogen bonds as determinants of protein interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Factors governing loss and rescue of DNA binding upon single and double mutations in the p53 core domain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Flexibility and packing in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Biological significance of a small highly conserved region in the N terminus of the p53 tumour suppressor protein.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

A structural basis for processivity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Crystal structure of the mouse p53 core DNA-binding domain at 2.7 A resolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

28 July 2018

Surfing the p53 network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Structure of the negative regulatory domain of p53 bound to S100B(betabeta)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

p53-induced DNA bending and twisting: p53 tetramer binds on the outer side of a DNA loop and increases DNA twisting

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Canonical dynamics: Equilibrium phase-space distributions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

How p53 binds DNA as a tetramer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Identification of an additional negative regulatory region for p53 sequence-specific DNA binding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

High-resolution structure of the oligomerization domain of p53 by multidimensional NMR

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Crystal structure of the tetramerization domain of the p53 tumor suppressor at 1.7 angstroms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

p53 oligomerization and DNA looping are linked with transcriptional activation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Refined solution structure of the oligomerization domain of the tumour suppressor p53

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

The carboxyl-terminal domain of the p53 protein regulates sequence-specific DNA binding through its nonspecific nucleic acid-binding activity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Role of tumor suppressor p53 domains in selective binding to supercoiled DNA.

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500215102

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500215102

All-atom empirical potential for molecular modeling and dynamics studies of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500215102

New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500215102

Reactivity of zinc finger cores: analysis of protein packing and electrostatic screening.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500215102

p53 mutants exhibiting enhanced transcriptional activation and altered promoter selectivity are revealed using a sensitive, yeast-based functional assay

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500215102

Structural differences in the DNA binding domains of human p53 and its C. elegans ortholog Cep-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500215102

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500215102

Dynamic interactions of p53 with DNA in solution by time-lapse atomic force microscopy

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554805

Recognition of DNA by p53 Core Domain and Location of Intermolecular Contacts of Cooperative Binding

29 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500215102

Conformational and molecular basis for induction of apoptosis by a p53 C-terminal peptide in human cancer cells

21 January 2018

1 reference

12 December 2020

The C-terminus of p53: the more you learn the less you know

1 reference

12 December 2020

NMR spectroscopy reveals the solution dimerization interface of p53 core domains bound to their consensus DNA

1 reference

12 December 2020

The transcriptional program following p53 activation

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0500215102

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

15738397