A "master" in base unpairing during isomerization of a promoter upon RNA polymerase binding. (Q33952687)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11734629%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

title

A "master" in base unpairing during isomerization of a promoter upon RNA polymerase binding (English)

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4 December 2019

1

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4 December 2019

author name string

Lee HJ

series ordinal

2

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4 December 2019

Roy S

series ordinal

3

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4 December 2019

Adhya S

series ordinal

4

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4 December 2019

language of work or name

English

0 references

publication date

4 December 2001

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11734629%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

4 December 2019

published in

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4 December 2019

volume

98

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4 December 2019

issue

26

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4 December 2019

page(s)

14849-14852

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Aromatic amino acids in region 2.3 of Escherichia coli sigma 70 participate collectively in the formation of an RNA polymerase-promoter open complex

4 December 2019

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5 July 2018

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Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners

5 July 2018

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Open complex formation during transcription initiation at the Escherichia coli galP1 promoter: the role of the RNA polymerase alpha subunit at promoters lacking an UP-element

5 July 2018

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A mutant RNA polymerase that forms unusual open promoter complexes

5 July 2018

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Influence of Mg2+ and temperature on formation of the transcription bubble

5 July 2018

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Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase

5 July 2018

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RNA polymerase idling and clearance in gal promoters: use of supercoiled minicircle DNA template made in vivo

5 July 2018

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A promoter melting region in the primary sigma factor of Bacillus subtilis. Identification of functionally important aromatic amino acids

5 July 2018

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Thermal energy requirement for strand separation during transcription initiation: the effect of supercoiling and extended protein DNA contacts

5 July 2018

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In vitro transcription close to the melting point of DNA: analysis of Thermotoga maritima RNA polymerase-promoter complexes at 75 degrees C using chemical probes

5 July 2018

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HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site

5 July 2018

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Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase-induced strand separation of double helical DNA

5 July 2018

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Compilation and analysis ofEscherichia colipromoter DNA sequences

5 July 2018

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Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter

5 July 2018

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Temperature dependence of the rate constants of the Escherichia coli RNA polymerase-lambda PR promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening

5 July 2018

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Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps

5 July 2018

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Mechanism and control of transcription initiation in prokaryotes

5 July 2018

1 reference

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Base pairing and mutagenesis: observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64947

Functional analysis of different sequence elements in the Escherichia coli galactose operon P2 promoter

5 July 2018

1 reference

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Structure and function of bacterial sigma factors

5 July 2018

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KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo

5 July 2018

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Unwinding of duplex DNA during transcription initiation at the Escherichia coli galactose operon overlapping promoters

5 July 2018

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10 Footprinting protein-DNA complexes in Vivo

5 July 2018

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Modulation of the two promoters of the galactose operon of Escherichia coli

5 July 2018

1 reference

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Dual control for transcription of the galactose operon by cyclic AMP and its receptor protein at two interspersed promoters

5 July 2018

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DNA-melting at the Bacillus subtilis flagellin promoter nucleates near -10 and expands unidirectionally.

5 July 2018

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Pathway of promoter melting by Bacillus subtilis RNA polymerase at a stable RNA promoter: effects of temperature, delta protein, and sigma factor mutations.

21 January 2018

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A novel RNA polymerase binding site upstream of the galactose promoter in Escherichia coli exhibits promoter-like activity

21 January 2018

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Mutations in the Escherichia coli operon that define two promoters and the binding site of the cyclic AMP receptor protein.

21 January 2018

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Studies with theEscherichia coligalactose operon regulatory region carrying a point mutation that simultaneously inactivates the two overlapping promoters Interactions with RNA polymerase and the cyclic AMP receptor protein

21 January 2018

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Different roles for basic and aromatic amino acids in conserved region 2 of Escherichia coli sigma(70) in the nucleation and maintenance of the single-stranded DNA bubble in open RNA polymerase-promoter complexes

21 January 2018

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Stimulation of open complex formation by nicks and apurinic sites suggests a role for nucleation of DNA melting in Escherichia coli promoter function

29 October 2018

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Effects of functional group changes in the EcoRI recognition site on the cleavage reaction catalyzed by the endonuclease

21 January 2018

1 reference

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Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studies

21 January 2018

1 reference

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Base stacking and unstacking as determined from a DNA decamer containing a fluorescent base

21 January 2018

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Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11734629

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.261517398

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11734629%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

0 references

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4 December 2019

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