Nucleoprotein architectures regulating the directionality of viral integration and excision (Q34120128)

25114241

31 July 2017

title

Nucleoprotein architectures regulating the directionality of viral integration and excision (English)

1 reference

31 July 2017

3

1 reference

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2 June 2020

author name string

Nicole E Seah

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25114241%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

David Warren

2

1 reference

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2 June 2020

Gurunathan Laxmikanthan

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25114241%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Gregory D Van Duyne

5

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2 June 2020

Arthur Landy

6

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2 June 2020

language of work or name

English

0 references

publication date

11 August 2014

1 reference

25114241

Proceedings of the National Academy of Sciences of the United States of America

31 July 2017

published in

1 reference

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2 June 2020

volume

111

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2 June 2020

issue

34

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2 June 2020

page(s)

12372-12377

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25114241%20AND%20SRC:MED&resulttype=core&format=json

Mapping the λ Integrase bridges in the nucleoprotein Holliday junction intermediates of viral integrative and excisive recombination.

2 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Stoichiometric incorporation of base substitutions at specific sites in supercoiled DNA and supercoiled recombination intermediates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

The shape of the DNA minor groove directs binding by the DNA-bending protein Fis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Single-molecule FRET-derived model of the synaptotagmin 1-SNARE fusion complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Impact of emission anisotropy on fluorescence spectroscopy and FRET distance measurements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Single-molecule FRET measures bends and kinks in DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

A biotin interference assay highlights two different asymmetric interaction profiles for lambda integrase arm-type binding sites in integrative versus excisive recombination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Version 1.2 of the Crystallography and NMR system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Fis Targets Assembly of the Xis Nucleoprotein Filament to Promote Excisive Recombination by Phage Lambda

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Direct observation of DNA bending/unbending kinetics in complex with DNA-bending protein IHF.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Stepwise binding and bending of DNA by Escherichia coli integration host factor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Viewing single lambda site-specific recombination events from start to finish

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Mechanisms of site-specific recombination.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

A structural basis for allosteric control of DNA recombination by lambda integrase.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Architecture of recombination intermediates visualized by in-gel FRET of lambda integrase-Holliday junction-arm DNA complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

A conformational switch controls the DNA cleavage activity of lambda integrase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

The Escherichia coli Fis Protein Stimulates Bacteriophage λ Integrative Recombination In Vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Differential affinity and cooperativity functions of the amino-terminal 70 residues of lambda integrase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Kappa-squared: from nuisance to new sense

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Arm-site binding by lambda -integrase: solution structure and functional characterization of its amino-terminal domain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Fluorescence resonance energy transfer as a structural tool for nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

The topological mechanism of phage lambda integrase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Flexibility in DNA recombination: structure of the lambda integrase catalytic core

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Knotting of DNA caused by a genetic rearrangement. Evidence for a nucleosome-like structure in site-specific recombination of bacteriophage lambda

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Purification of Bacteriophage λ, Int Protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Bacteriophage lambda site-specific recombination proceeds with a defined order of strand exchanges

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Control of directionality in lambda site specific recombination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Three-dimensional structure of the E. coli DNA-binding protein FIS.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Multiple effects of Fis on integration and the control of lysogeny in phage lambda

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Characterization of the bacteriophage lambda excisionase (Xis) protein: the C-terminus is required for Xis-integrase cooperativity but not for DNA binding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Excision of prophage lambda in a cell-free system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Integrative recombination of bacteriophage lambda DNA in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Viral integration and excision: structure of the lambda att sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151757

Crystal structure of the excisionase-DNA complex from bacteriophage lambda

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1413019111

Quantitative distance information on protein-DNA complexes determined in polyacrylamide gels by fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1413019111

Expression of the human mu opioid receptor in a stable Sf9 cell line

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1413019111

Long-range electrostatic interactions influence the orientation of fos-jun binding at AP-1 sites11Edited by T. Richmond

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1413019111

Site-specific recombination of bacteriophage lambda. The change in topological linking number associated with exchange of DNA strands

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25114241

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Site-specific recombination intermediates trapped with suicide substrates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25114241

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein-protein interactions in a higher-order structure direct lambda site-specific recombination

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25114241

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1413019111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25114241%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25114241%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

25114241

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25114241%20AND%20SRC:MED&resulttype=core&format=json