DExD/H-box proteins and their partners: helping RNA helicases unwind (Q34221058)

31 July 2017

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title

DExD/H-box proteins and their partners: helping RNA helicases unwind (English)

1 reference

31 July 2017

Ren-Jang Lin

3

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author name string

Edward Silverman

series ordinal

1

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PubMed ID

12909336

31 July 2017

Gretchen Edwalds-Gilbert

series ordinal

2

1 reference

PubMed ID

12909336

31 July 2017

language of work or name

English

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publication date

1 July 2003

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31 July 2017

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31 July 2017

312

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31 July 2017

1-16

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Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase

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The yeast nuclear gene DSS1, which codes for a putative RNase II, is necessary for the function of the mitochondrial degradosome in processing and turnover of RNA.

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Dominant negative mutants of the yeast splicing factor Prp2 map to a putative cleft region in the helicase domain of DExD/H-box proteins.

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U2AF65 recruits a novel human DEAD box protein required for the U2 snRNP-branchpoint interaction

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Spliceosome activation by PRP2 ATPase prior to the first transesterification reaction of pre-mRNA splicing

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Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase

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Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae

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Splicing factor Prp8 governs U4/U6 RNA unwinding during activation of the spliceosome

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Distinct domains of splicing factor Prp8 mediate different aspects of spliceosome activation

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The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro

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Initial sequencing and analysis of the human genome

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Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation

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Multiple roles for the yeast SUB2/yUAP56 gene in splicing

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mRNA export: travelling with DEAD box proteins

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The Ded1 DEAD box helicase interacts with Chk1 and Cdc2

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p68 RNA helicase is an essential human splicing factor that acts at the U1 snRNA-5' splice site duplex

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RNA chaperones exist and DEAD box proteins get a life

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Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly

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Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome.

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A conserved role of a DEAD box helicase in mRNA masking

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A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

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miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs

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tRNA-like recognition of group I introns by a tyrosyl-tRNA synthetase

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The nuclear DEAD box RNA helicase p68 interacts with the nucleolar protein fibrillarin and colocalizes specifically in nascent nucleoli during telophase

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7 January 2021

Overexpression of DEAD box protein pMSS116 promotes ATP-dependent splicing of a yeast group II intron in vitro

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7 January 2021

60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm

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7 January 2021

ATP requirements and small interfering RNA structure in the RNA interference pathway

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7 January 2021

Characterization of interactions among the Cef1p-Prp19p-associated splicing complex

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7 January 2021

The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding

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A functional interaction between the survival motor neuron complex and RNA polymerase II

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7 January 2021

A dominant negative mutation in the conserved RNA helicase motif 'SAT' causes splicing factor PRP2 to stall in spliceosomes.

1 reference

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7 January 2021

Product release is the major contributor to kcat for the hepatitis C virus helicase-catalyzed strand separation of short duplex DNA.

1 reference

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7 January 2021

Expression of the essential mRNA export factor Yra1p is autoregulated by a splicing-dependent mechanism

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7 January 2021

Ribonuclease activity and RNA binding of recombinant human Dicer

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7 January 2021

The Caenorhabditis elegans sex determination gene mog-1 encodes a member of the DEAH-Box protein family

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7 January 2021

The hermaphrodite sperm/oocyte switch requires the Caenorhabditis elegans homologs of PRP2 and PRP22.

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7 January 2021

A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

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7 January 2021

RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2

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7 January 2021

Large-scale proteomic analysis of the human spliceosome

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7 January 2021

Sam68, RNA helicase A and Tap cooperate in the post-transcriptional regulation of human immunodeficiency virus and type D retroviral mRNA

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7 January 2021

Degradation of mRNA in bacteria: emergence of ubiquitous features

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7 January 2021

Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F.

1 reference

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7 January 2021

Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F

1 reference

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7 January 2021

Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly

1 reference

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7 January 2021

Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Characterization of dominant-negative mutants of the DEAH-box splicing factors Prp22 and Prp16

1 reference

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7 January 2021

Why do miRNAs live in the miRNP?

1 reference

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7 January 2021

A new twist on RNA helicases: DExH/D box proteins as RNPases

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Mitochondrial splicing requires a protein from a novel helicase family

1 reference

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7 January 2021

Systematic identification, classification, and characterization of the open reading frames which encode novel helicase-related proteins in Saccharomyces cerevisiae by gene disruption and Northern analysis

1 reference

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7 January 2021

Functional interactions of Prp8 with both splice sites at the spliceosomal catalytic center

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Dbp5p/Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export

1 reference

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7 January 2021

Mechanical devices of the spliceosome: motors, clocks, springs, and things

1 reference

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7 January 2021

An RNA switch at the 5' splice site requires ATP and the DEAD box protein Prp28p

1 reference

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7 January 2021

Composition and functional characterization of the yeast spliceosomal penta-snRNP.

1 reference

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7 January 2021

The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

TREX is a conserved complex coupling transcription with messenger RNA export

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

A cold-sensitive mRNA splicing mutant is a member of the RNA helicase gene family

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

PRP28, a 'DEAD-box' protein, is required for the first step of mRNA splicing in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5' secondary structure.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans

1 reference

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7 January 2021

Unwinding of nucleic acids by HCV NS3 helicase is sensitive to the structure of the duplex

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Specific interaction between RNA helicase A and Tap, two cellular proteins that bind to the constitutive transport element of type D retrovirus

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

DExD/H box RNA helicases: from generic motors to specific dissociation functions

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Two mutant forms of the S1/TPR-containing protein Rrp5p affect the 18S rRNA synthesis in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export

1 reference

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7 January 2021

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

The exosome: a proteasome for RNA?

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Rok1p is a putative RNA helicase required for rRNA processing

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

The Sequence of the Human Genome

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

1 reference

7 January 2021

Synthetic lethal interactions with conditional poly(A) polymerase alleles identify LCP5, a gene involved in 18S rRNA maturation

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

An RNA-dependent ATPase associated with U2/U6 snRNAs in pre-mRNA splicing

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Mapping the functional domains of HAP95, a protein that binds RNA helicase A and activates the constitutive transport element of type D retroviruses

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Molecular views of viral polyprotein processing revealed by the crystal structure of the hepatitis C virus bifunctional protease-helicase

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

RNA interference: listening to the sound of silence

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Identification and characterization of yUAP/Sub2p, a yeast homolog of the essential human pre-mRNA splicing factor hUAP56

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

The mRNA export factor Dbp5 is associated with Balbiani ring mRNP from gene to cytoplasm

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

Comprehensive proteomic analysis of the human spliceosome

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900626-7

7 January 2021

10.1016/S0378-1119(03)00626-7

Identifiers

DOI

1 reference

31 July 2017

1 reference

PubMed ID

12909336