A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length. (Q34397017)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15728117%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

title

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length (English)

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8 January 2020

2

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8 January 2020

Dmitry A. Ravcheev

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15728117%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Vsevolod Makeev

6

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8 January 2020

author name string

Favorov AV

1

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8 January 2020

Gerasimova AV

3

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8 January 2020

Mironov AA

5

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8 January 2020

language of work or name

English

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publication date

22 February 2005

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8 January 2020

1 reference

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8 January 2020

volume

21

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8 January 2020

issue

10

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8 January 2020

page(s)

2240-2245

1 reference

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Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

8 January 2020

cites work

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Computational prediction of transcription-factor binding site locations

21 January 2018

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Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts

21 January 2018

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Expression of the narX, narL, narP, and narQ genes of Escherichia coli K-12: regulation of the regulators.

21 January 2018

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Differential regulation by the homologous response regulators NarL and NarP of Escherichia coli K-12 depends on DNA binding site arrangement.

21 January 2018

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Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

21 January 2018

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Comparative analysis of regulatory patterns in bacterial genomes.

21 January 2018

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Transcriptional regulatory code of a eukaryotic genome

21 January 2018

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Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

21 January 2018

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Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

21 January 2018

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TRANSCompel: a database on composite regulatory elements in eukaryotic genes.

21 January 2018

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

21 January 2018

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Identification of the binding sites of regulatory proteins in bacterial genomes

21 January 2018

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Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling.

21 January 2018

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An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

21 January 2018

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Transcriptional control mediated by the ArcA two-component response regulator protein of Escherichia coli: characterization of DNA binding at target promoters

21 January 2018

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Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information.

21 January 2018

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Dimerization allows DNA target site recognition by the NarL response regulator

21 January 2018

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A weight matrix for binding recognition by the redox-response regulator ArcA-P of Escherichia coli

21 January 2018

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Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes

21 January 2018

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Genome wide identification of regulatory motifs in Bacillus subtilis

21 January 2018

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Identifying regulatory networks by combinatorial analysis of promoter elements

21 January 2018

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Computational analysis of composite regulatory elements.

21 January 2018

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Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

21 January 2018

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Sequence logos: a new way to display consensus sequences

21 January 2018

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Identifying protein-binding sites from unaligned DNA fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI336

Gibbs Recursive Sampler: finding transcription factor binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI336

Assessing computational tools for the discovery of transcription factor binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI336

Discovering regulatory elements in non-coding sequences by analysis of spaced dyads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI336

10.1093/BIOINFORMATICS/BTI336

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15728117%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/FavorovGGRMM05

8 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_vehd727ffvbwrf4y6wf6i6o2fi

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vehd727ffvbwrf4y6wf6i6o2fi

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference