Subnuclear compartmentalization of transiently expressed polyadenylated pri-microRNAs: processing at transcription sites or accumulation in SC35 foci (Q34417574)

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English	Subnuclear compartmentalization of transiently expressed polyadenylated pri-microRNAs: processing at transcription sites or accumulation in SC35 foci	scientific article

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scholarly article

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Europe PubMed Central

2 August 2017

Subnuclear compartmentalization of transiently expressed polyadenylated pri-microRNAs: processing at transcription sites or accumulation in SC35 foci (English)

1 reference

Europe PubMed Central

2 August 2017

1 reference

based on heuristic

inferred from title

2

object named as

Joan A Steitz

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Europe PubMed Central

2 August 2017

author name string

Jan M Pawlicki

1

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Europe PubMed Central

2 August 2017

publication date

21 February 2009

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Europe PubMed Central

2 August 2017

number of pages

12

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based on heuristic

inferred from page(s)

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Europe PubMed Central

2 August 2017

8

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Europe PubMed Central

2 August 2017

345-356

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Europe PubMed Central

2 August 2017

3

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Europe PubMed Central

2 August 2017

Primary microRNA transcripts are processed co-transcriptionally.

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Control of cell proliferation pathways by microRNAs

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Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs

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Association between active genes occurs at nuclear speckles and is modulated by chromatin environment

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Mechanisms of microRNA deregulation in human cancer

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microRNAs and cancer: an overview

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Functional integration of microRNAs into oncogenic and tumor suppressor pathways

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Cotranscriptional splicing potentiates the mRNA production from a subset of estradiol-stimulated genes.

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The splicing factor SC35 has an active role in transcriptional elongation

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The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis

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Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production

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Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing

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Functional integration of transcriptional and RNA processing machineries

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Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing

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Pin1 modulates RNA polymerase II activity during the transcription cycle

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The prolyl isomerase PIN1: a pivotal new twist in phosphorylation signalling and disease

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DEAD-box RNA helicase subunits of the Drosha complex are required for processing of rRNA and a subset of microRNAs

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C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing

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Phosphorylation of the C-terminal domain of RNA polymerase II plays central roles in the integrated events of eucaryotic gene expression

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Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body

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Splicing speckles are not reservoirs of RNA polymerase II, but contain an inactive form, phosphorylated on serine2 residues of the C-terminal domain

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Processing of primary microRNAs by the Microprocessor complex

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Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs

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Multiple links between transcription and splicing

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MicroRNA genes are transcribed by RNA polymerase II

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MicroRNAs: genomics, biogenesis, mechanism, and function

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Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs

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Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs

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Nuclear export of microRNA precursors

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Repositioning of Muscle-specific Genes Relative to the Periphery of SC-35 Domains during Skeletal Myogenesis

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Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: evidence for local euchromatic neighborhoods

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Nuclear speckles: a model for nuclear organelles

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A quantitative analysis of intron effects on mammalian gene expression

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Roles of hnRNP A1, SR proteins, and p68 helicase in c-H-ras alternative splicing regulation

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6 July 2018

Synergism between p68 RNA helicase and the transcriptional coactivators CBP and p300

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6 July 2018

Evidence that all SC-35 domains contain mRNAs and that transcripts can be structurally constrained within these domains

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6 July 2018

On the importance of being co-transcriptional

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6 July 2018

Regulation of alternative splicing by the ATP-dependent DEAD-box RNA helicase p72.

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6 July 2018

A history of poly A sequences: from formation to factors to function

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Phosphorylation-dependent proline isomerization catalyzed by Pin1 is essential for tumor cell survival and entry into mitosis

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6 July 2018

Tracking COL1A1 RNA in osteogenesis imperfecta. splice-defective transcripts initiate transport from the gene but are retained within the SC35 domain

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6 July 2018

Nuclear pre-mRNA compartmentalization: trafficking of released transcripts to splicing factor reservoirs

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Phospho-carboxyl-terminal domain binding and the role of a prolyl isomerase in pre-mRNA 3'-End formation

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6 July 2018

Purification and biochemical characterization of interchromatin granule clusters

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6 July 2018

Npw38, a novel nuclear protein possessing a WW domain capable of activating basal transcription

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6 July 2018

Processing of endogenous pre-mRNAs in association with SC-35 domains is gene specific

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6 July 2018

Ultrastructural analysis of transcription and splicing in the cell nucleus after bromo-UTP microinjection

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6 July 2018

Co-transcriptional commitment to alternative splice site selection.

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Participation of the nuclear cap binding complex in pre-mRNA 3' processing

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Functional association between promoter structure and transcript alternative splicing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Transcription factor TFIID recruits factor CPSF for formation of 3' end of mRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Interaction between the human nuclear cap-binding protein complex and hnRNP F

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Role of polyadenylation in nucleocytoplasmic transport of mRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Nonrandom gene organization: structural arrangements of specific pre-mRNA transcription and splicing with SC-35 domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Functional analysis of pre-mRNA splicing factor SF2/ASF structural domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Immunodetection of poly(A) binding protein II in the cell nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

A nuclear cap binding protein complex involved in pre-mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Physical isolation of nascent RNA chains transcribed by RNA polymerase II: evidence for cotranscriptional splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Mature mRNA 3' end formation stimulates RNA export from the nucleus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Discrete nuclear domains of poly(A) RNA and their relationship to the functional organization of the nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

6 July 2018

Gene associations: true romance or chance meeting in a nuclear neighborhood?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

The transcription factor c-Myb affects pre-mRNA splicing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

A link between RNA metabolism and silencing affecting Arabidopsis development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

Regulation of ATR-dependent pathways by the FHA domain containing protein SNIP1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

Coordinate regulation of transcription and splicing by steroid receptor coregulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

Critical role of WW domain phosphorylation in regulating phosphoserine binding activity and Pin1 function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

Identification of a Rapid Mammalian Deadenylation-Dependent Decay Pathway and Its Inhibition by a Viral RNA Element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004524

27 October 2018

Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/19177009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/19177009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Localization of pre-mRNA splicing in mammalian nuclei

1 reference

https://pubmed.ncbi.nlm.nih.gov/19177009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.4161/CC.8.3.7494

1 reference

Europe PubMed Central

2 August 2017

1 reference

Europe PubMed Central

2 August 2017

1 reference

Europe PubMed Central

2 August 2017

ResearchGate publication ID

0 references

Sitelinks

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