Spatial congregation of STAT binding directs selective nuclear architecture during T-cell functional differentiation. (Q34501482)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23212947%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

title

Spatial congregation of STAT binding directs selective nuclear architecture during T-cell functional differentiation (English)

1 reference

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19 February 2020

2

1 reference

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19 February 2020

6

Gordon L Hager

1 reference

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19 February 2020

author name string

Ofir Hakim

1

1 reference

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19 February 2020

Shingo Nakayamada

3

1 reference

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19 February 2020

Ty C Voss

4

1 reference

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19 February 2020

Songjoon Baek

5

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19 February 2020

publication date

3 December 2012

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19 February 2020

1 reference

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19 February 2020

volume

23

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19 February 2020

issue

3

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19 February 2020

page(s)

462-472

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Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate

19 February 2020

cites work

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7 July 2018

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Helper T cell diversity and plasticity

7 July 2018

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7 July 2018

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Transcriptional and epigenetic control of T helper cell specification: molecular mechanisms underlying commitment and plasticity.

7 July 2018

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Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells

7 July 2018

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Early Th1 cell differentiation is marked by a Tfh cell-like transition

7 July 2018

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Chromosome organization by a nucleoid-associated protein in live bacteria

7 July 2018

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Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism

7 July 2018

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Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes

7 July 2018

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The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.

7 July 2018

1 reference

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SOCS2 regulates T helper type 2 differentiation and the generation of type 2 allergic responses.

7 July 2018

1 reference

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Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements

7 July 2018

1 reference

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Extensive chromatin remodelling and establishment of transcription factor 'hotspots' during early adipogenesis.

7 July 2018

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Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

7 July 2018

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Regulation of the Ifng locus in the context of T-lineage specification and plasticity.

7 July 2018

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Loss of Bright/ARID3a Function Promotes Developmental Plasticity

7 July 2018

1 reference

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Discrete roles of STAT4 and STAT6 transcription factors in tuning epigenetic modifications and transcription during T helper cell differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Differentiation and large scale spatial organization of the genome

7 July 2018

1 reference

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3D shortcuts to gene regulation

7 July 2018

1 reference

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The transcription factor GATA3 actively represses RUNX3 protein-regulated production of interferon-gamma

7 July 2018

1 reference

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Differentiation of effector CD4 T cell populations (*)

7 July 2018

1 reference

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Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Ikaros silences T-bet expression and interferon-gamma production during T helper 2 differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

7 July 2018

1 reference

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Genome-wide mechanisms of nuclear receptor action

7 July 2018

1 reference

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Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

7 July 2018

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Lack of bystander activation shows that localization exterior to chromosome territories is not sufficient to up-regulate gene expression

7 July 2018

1 reference

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The Current STATus of lymphocyte signaling: new roles for old players.

7 July 2018

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Control of T helper cell differentiation through cytokine receptor inclusion in the immunological synapse

7 July 2018

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IL-2- and CD25-dependent immunoregulatory mechanisms in the homeostasis of T-cell subsets

7 July 2018

1 reference

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Epigenetics and T helper 1 differentiation

7 July 2018

1 reference

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Epigenetic control of T-helper-cell differentiation

7 July 2018

1 reference

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Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells

7 July 2018

1 reference

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Transgenic mice expressing dominant-negative bright exhibit defects in B1 B cells

7 July 2018

1 reference

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Global transcription in pluripotent embryonic stem cells.

7 July 2018

1 reference

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T cell antigen receptor stimulation induces MALT1 paracaspase-mediated cleavage of the NF-kappaB inhibitor A20

7 July 2018

1 reference

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Cutting edge: A transcriptional repressor and corepressor induced by the STAT3-regulated anti-inflammatory signaling pathway

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

The Foxn1-dependent transcripts PCOLCE2 and mPPP1R16B are not required for normal thymopoiesis

7 July 2018

1 reference

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Beyond the sequence: cellular organization of genome function

7 July 2018

1 reference

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Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

7 July 2018

1 reference

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Proprotein convertase furin is preferentially expressed in T helper 1 cells and regulates interferon gamma.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

T-bet regulates Th1 responses through essential effects on GATA-3 function rather than on IFNG gene acetylation and transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

New IL-12-family members: IL-23 and IL-27, cytokines with divergent functions

7 July 2018

1 reference

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Global analysis of IL-2 target genes: identification of chromosomal clusters of expressed genes.

7 July 2018

1 reference

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Interchromosomal associations between alternatively expressed loci

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

The lineage decisions of helper T cells

7 July 2018

1 reference

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Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development

7 July 2018

1 reference

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Protein kinase C(theta) in T cell activation

7 July 2018

1 reference

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T-bet is rapidly induced by interferon-gamma in lymphoid and myeloid cells

7 July 2018

1 reference

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Dynamic repositioning of genes in the nucleus of lymphocytes preparing for cell division

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Quantitative analysis of genome-wide chromatin remodeling

7 July 2018

1 reference

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Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

27 October 2018

1 reference

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A continuous T-bet expression is required to silence the interleukin-4-producing potential in T helper type 1 cells

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Type 4 sphingosine 1-phosphate G protein-coupled receptor (S1P4) transduces S1P effects on T cell proliferation and cytokine secretion without signaling migration

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Nuclear repositioning marks the selective exclusion of lineage-inappropriate transcription factor loci during T helper cell differentiation.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Cell proliferation and STAT6 pathways are negatively regulated in T cells by STAT1 and suppressors of cytokine signaling

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Spatial genome organization during T-cell differentiation

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Cloning of murine IL-22 receptor alpha 2 and comparison with its human counterpart

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Microsatellite instability in in vitro ageing of T lymphocyte clones

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Death-inducing functions of ligands of the tumor necrosis factor family: a Sanhedrin verdict

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589535

Transcription factors T-bet and Runx3 cooperate to activate Ifng and silence Il4 in T helper type 1 cells

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23212947

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Gene expression analysis of purified hematopoietic stem cells and committed progenitors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23212947

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.147652.112

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23212947%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23212947%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

PubMed publication ID

23212947

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23212947%20AND%20SRC:MED&resulttype=core&format=json