New genes as drivers of phenotypic evolution (Q34535226)

2 August 2017

title

New genes as drivers of phenotypic evolution (English)

1 reference

2 August 2017

Sidi Chen

1

1 reference

2 August 2017

Benjamin H Krinsky

series ordinal

2

1 reference

2 August 2017

Manyuan Long

series ordinal

3

1 reference

2 August 2017

publication date

1 September 2013

1 reference

2 August 2017

published in

Nature Reviews Genetics

1 reference

2 August 2017

volume

14

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2 August 2017

issue

9

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2 August 2017

page(s)

645-660

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New gene evolution: little did we know

2 August 2017

cites work

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Frequent recent origination of brain genes shaped the evolution of foraging behavior in Drosophila

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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TBC1D3, a hominoid-specific gene, delays IRS-1 degradation and promotes insulin signaling by modulating p70 S6 kinase activity

7 July 2018

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Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition

7 July 2018

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Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster

7 July 2018

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Accelerated recruitment of new brain development genes into the human genome

7 July 2018

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Roles of young serine-endopeptidase genes in survival and reproduction revealed rapid evolution of phenotypic effects at adult stages

7 July 2018

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Role of testis-specific gene expression in sex-chromosome evolution of Anopheles gambiae.

7 July 2018

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The evolutionary origin of orphan genes

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

The evolutionary history of the SAL1 gene family in eutherian mammals

7 July 2018

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Highly tissue specific expression of Sphinx supports its male courtship related role in Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Novel genes exhibit distinct patterns of function acquisition and network integration

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

New genes in Drosophila quickly become essential

7 July 2018

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A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

7 July 2018

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Gene expression divergence recapitulates the developmental hourglass model

7 July 2018

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Diversity of human copy number variation and multicopy genes

7 July 2018

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Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Comparative Genomic Hybridization (CGH) reveals a neo-X chromosome and biased gene movement in stalk-eyed flies (genus Teleopsis).

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Age-dependent chromosomal distribution of male-biased genes in Drosophila

7 July 2018

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Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study

7 July 2018

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Dosage compensation and demasculinization of X chromosomes in Drosophila

7 July 2018

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7 July 2018

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The Amphimedon queenslandica genome and the evolution of animal complexity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Retrogenes reveal the direction of sex-chromosome evolution in mosquitoes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Origins, evolution, and phenotypic impact of new genes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Odorant receptor polymorphisms and natural variation in olfactory behavior in Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Direct evidence for postmeiotic transcription during Drosophila melanogaster spermatogenesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Rapid sequence and expression divergence suggest selection for novel function in primate-specific KRAB-ZNF genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

In vivo RNAi: today and tomorrow

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Genotype to phenotype: a complex problem

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Distinct molecular evolutionary mechanisms underlie the functional diversification of the Wnt and TGFbeta signaling pathways

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

A complex suite of forces drives gene traffic from Drosophila X chromosomes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Systematic genetic analysis of muscle morphogenesis and function in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Evolution of a novel phenolic pathway for pollen development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Emergence of a new gene from an intergenic region

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs

7 July 2018

1 reference

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Lineage-specific biology revealed by a finished genome assembly of the mouse

7 July 2018

1 reference

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Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi

7 July 2018

1 reference

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General gene movement off the X chromosome in the Drosophila genus

7 July 2018

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Umbrea, a chromo shadow domain protein in Drosophila melanogaster heterochromatin, interacts with Hip, HP1 and HOAP.

7 July 2018

1 reference

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Variant ionotropic glutamate receptors as chemosensory receptors in Drosophila

7 July 2018

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RNA-based gene duplication: mechanistic and evolutionary insights

7 July 2018

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Birth and rapid subcellular adaptation of a hominoid-specific CDC14 protein

7 July 2018

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The evolution of courtship behaviors through the origination of a new gene in Drosophila

7 July 2018

1 reference

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Relaxin-3 stimulates the hypothalamic-pituitary-gonadal axis

7 July 2018

1 reference

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Origin of INSL3-mediated testicular descent in therian mammals

7 July 2018

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The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

7 July 2018

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Demasculinization of X chromosomes in the Drosophila genus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

X chromosome inactivation during Drosophila spermatogenesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Extensive gains and losses of olfactory receptor genes in mammalian evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Canalization of segmentation and its evolution in Drosophila.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Coding of odors by a receptor repertoire

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Phylogenetic comparisons suggest that distance from the locus control region guides developmental expression of primate beta-type globin genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Elucidation of clathrin-mediated endocytosis in tetrahymena reveals an evolutionarily convergent recruitment of dynamin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Evolution at two levels: on genes and form

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Emerging technologies for gene manipulation in Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Evolving protein functional diversity in new genes of Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Lineage-specific gene duplication and loss in human and great ape evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Extensive gene traffic on the mammalian X chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

The origin of new genes: glimpses from the young and old

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Sexual antagonism and X inactivation--the SAXI hypothesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Paucity of genes on the Drosophila X chromosome showing male-biased expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Retroposed new genes out of the X in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Evolutionary dynamics of plant R-genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Lethality and centrality in protein networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Conditional modification of behavior in Drosophila by targeted expression of a temperature-sensitive shibire allele in defined neurons

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Function of bicoid and hunchback homologs in the basal cyclorrhaphan fly Megaselia (Phoridae).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Molecular evidence for the early evolution of photosynthesis.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

The origin of the Jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Representation of the calyces in the medial and vertical lobes of cockroach mushroom bodies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Organization of olfactory and multimodal afferent neurons supplying the calyx and pedunculus of the cockroach mushroom bodies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

The anterior determinant bicoid of Drosophila is a derived Hox class 3 gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish and Arctic cod

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Zygotic lethal mutations with maternal effect phenotypes in Drosophila melanogaster. II. Loci on the second and third chromosomes identified by P-element-induced mutations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

The role of the genome project in determining gene function: insights from model organisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Targeted gene expression as a means of altering cell fates and generating dominant phenotypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Genetic characterization of ms (3) K81, a paternal effect gene of Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Evolution at two levels in humans and chimpanzees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Post-embryonic cell lineages of the nematode, Caenorhabditis elegans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236023

Evolution of enzymatic activities of testis-specific short-chain dehydrogenase/reductase in Drosophila

7 July 2018

1 reference

A role for convergent evolution in the secretory life of cells

21 January 2018

1 reference

Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster.

21 January 2018

1 reference

A single p450 allele associated with insecticide resistance in Drosophila.

21 January 2018

1 reference

Control of a genetic regulatory network by a selector gene.

21 January 2018

1 reference

Maternal activation of gap genes in the hover fly Episyrphus.

21 January 2018

1 reference

Drosophila melanogaster p24 trafficking proteins have vital roles in development and reproduction.

21 January 2018

1 reference

The complex relationship of gene duplication and essentiality.

21 January 2018

1 reference

Bicoid occurrence and Bicoid-dependent hunchback regulation in lower cyclorrhaphan flies.

21 January 2018

1 reference

The evolution of milk casein genes from tooth genes before the origin of mammals

21 January 2018

1 reference

Selective sweep of a newly evolved sperm-specific gene in Drosophila

21 January 2018

1 reference

Origin and neofunctionalization of a Drosophila paternal effect gene essential for zygote viability.

21 January 2018

1 reference

Retrogene movement within- and between-chromosomes in the evolution of Drosophila genomes.

21 January 2018

1 reference

The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis

21 January 2018

1 reference

The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation

21 January 2018

1 reference

Re-analysis of the larval testis data on meiotic sex chromosome inactivation revealed evidence for tissue-specific gene expression related to the drosophila X chromosome

21 January 2018

1 reference

The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: a consequence of dosage compensation?

21 January 2018

1 reference

Nuclear chromosome dynamics in the Drosophila male germ line contribute to the nonrandom genomic distribution of retrogenes.

21 January 2018

1 reference

The birth and death of microRNA genes in Drosophila.

21 January 2018

1 reference

Evolution and selection of trichromatic vision in primates

21 January 2018

1 reference

Evolution of an antifreeze glycoprotein

21 January 2018

1 reference

Sex-dependent gene expression and evolution of the Drosophila transcriptome

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NRG3521

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference