Potential roles of microRNAs in regulating long intergenic noncoding RNAs (Q34570204)

3 August 2017

Potential roles of microRNAs in regulating long intergenic noncoding RNAs (English)

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3 August 2017

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4

Bryan P Schneider

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3 August 2017

3

Milan Radovich

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3 August 2017

Liran Juan

1

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3 August 2017

Guohua Wang

2

1 reference

3 August 2017

Susan E Clare

5

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3 August 2017

Yadong Wang

6

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3 August 2017

Yunlong Liu

7

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3 August 2017

23 January 2013

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3 August 2017

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3 August 2017

6 Suppl 1

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3 August 2017

S7

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https://scigraph.springernature.com/pub.10.1186/1755-8794-6-s1-s7

3 August 2017

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cites work

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A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy

7 July 2018

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Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs

7 July 2018

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Genome-wide analysis of long noncoding RNA stability

7 July 2018

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Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

7 July 2018

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NONCODE v3.0: integrative annotation of long noncoding RNAs

7 July 2018

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New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

7 July 2018

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miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA

7 July 2018

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lincRNAs act in the circuitry controlling pluripotency and differentiation

7 July 2018

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Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

7 July 2018

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microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer

7 July 2018

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No-nonsense functions for long noncoding RNAs

7 July 2018

1 reference

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Long intergenic noncoding RNAs: new links in cancer progression

7 July 2018

1 reference

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RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation

7 July 2018

1 reference

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miRBase: integrating microRNA annotation and deep-sequencing data

7 July 2018

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The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation

7 July 2018

1 reference

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Large non-coding RNAs: missing links in cancer?

7 July 2018

1 reference

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Mammalian microRNAs predominantly act to decrease target mRNA levels

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Annotating non-coding regions of the genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Long noncoding RNA as modular scaffold of histone modification complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Genome-wide computational identification and manual annotation of human long noncoding RNA genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 July 2018

1 reference

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

RNA-Seq gene expression estimation with read mapping uncertainty

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

BFAST: an alignment tool for large scale genome resequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Identifiability of isoform deconvolution from junction arrays and RNA-Seq.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Reticuloendotheliosis virus strain T induces miR-155, which targets JARID2 and promotes cell survival

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Identifying novel constrained elements by exploiting biased substitution patterns

7 July 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Statistical inferences for isoform expression in RNA-Seq

7 July 2018

1 reference

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

The Igf2/H19 imprinting control region exhibits sequence-specific and cell-type-dependent DNA methylation-mediated repression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

The database of experimentally supported targets: a functional update of TarBase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Most mammalian mRNAs are conserved targets of microRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

MicroRNA-17-92 down-regulates expression of distinct targets in different B-cell lymphoma subtypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

miR2Disease: a manually curated database for microRNA deregulation in human disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Noncoding RNA in development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Widespread changes in protein synthesis induced by microRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

MicroRNAs 221 and 222 bypass quiescence and compromise cell survival

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Sustained expression of microRNA-155 in hematopoietic stem cells causes a myeloproliferative disorder

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Distinguishing protein-coding and noncoding genes in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

The role of site accessibility in microRNA target recognition

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

GENCODE: producing a reference annotation for ENCODE

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

MicroRNA expression in zebrafish embryonic development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

The ENCODE (ENCyclopedia Of DNA Elements) Project

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

MicroRNAs: genomics, biogenesis, mechanism, and function

7 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

7 July 2018

https://api.crossref.org/works/10.1186%2F1755-8794-6-S1-S7

21 January 2018

The microRNA Registry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

A microRNA array reveals extensive regulation of microRNAs during brain development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

The human genome browser at UCSC

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3552696

Noncoding RNAs: the missing "linc" in p53-mediated repression

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-6-S1-S7

10.1186/1755-8794-6-S1-S7

21 January 2018

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3 August 2017

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3 August 2017

1 reference