Direct evolution of genetic robustness in microRNA. (Q34597873)

3 August 2017

Direct evolution of genetic robustness in microRNA. (English)

1 reference

3 August 2017

1 reference

2

Eytan Ruppin

1 reference

3 August 2017

1

Elhanan Borenstein

1 reference

PubMed ID

16608911

3 August 2017

language of work or name

English

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publication date

11 April 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

3 August 2017

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3 August 2017

103

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3 August 2017

6593-6598

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3 August 2017

17

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Fast and reliable prediction of noncoding RNAs

3 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

MicroRNAs: genomics, biogenesis, mechanism, and function

7 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

7 July 2018

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

21 January 2018

The microRNA Registry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Perspective: Evolution and detection of genetic robustness

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

The nuclear RNase III Drosha initiates microRNA processing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Rfam: an RNA family database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Role of duplicate genes in genetic robustness against null mutations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Functional profiling of the Saccharomyces cerevisiae genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Redundancy, antiredundancy, and the robustness of genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Noncoding RNA gene detection using comparative sequence analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

An extensive class of small RNAs in Caenorhabditis elegans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Identification of novel genes coding for small expressed RNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Computational identification of noncoding RNAs in E. coli by comparative genomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Evolution of digital organisms at high mutation rates leads to survival of the flattest

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Plasticity, evolvability, and modularity in RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Error and attack tolerance of complex networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Neutral evolution of mutational robustness

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

The evolution of dominance

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Viral RNA and evolved mutational robustness

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Complete suboptimal folding of RNA and the stability of secondary structures.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Low frequency vibrational modes in proteins: changes induced by point-mutations in the protein-cofactor matrix of bacterial reaction centers.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Smoothness within ruggedness: the role of neutrality in adaptation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

Improved free-energy parameters for predictions of RNA duplex stability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

PERSPECTIVE:EVOLUTION AND DETECTION OF GENETIC ROBUSTNESS

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

Deciphering the message in protein sequences: tolerance to amino acid substitutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

Genome-wide survey for biologically functional pseudogenes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

ddbRNA: detection of conserved secondary structures in multiple alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

On Information and Sufficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

Divergence measures based on the Shannon entropy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510600103

Robustness against mutations in genetic networks of yeast.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458928

26 October 2018

Identifiers

DOI

10.1073/PNAS.0510600103

1 reference

3 August 2017

0 references

1 reference

3 August 2017

1 reference

PubMed ID

16608911