Double-lock ratchet mechanism revealing the role of alphaSER-344 in FoF1 ATP synthase (Q34721063)

4 August 2017

Double-lock ratchet mechanism revealing the role of alphaSER-344 in FoF1 ATP synthase (English)

1 reference

4 August 2017

3

Bengt Nordén

1 reference

4 August 2017

Tamás Beke-Somfai

1

1 reference

PubMed ID

21383131

4 August 2017

Per Lincoln

series ordinal

2

1 reference

PubMed ID

21383131

4 August 2017

language of work or name

English

0 references

publication date

7 March 2011

1 reference

4 August 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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4 August 2017

108

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4 August 2017

12

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4 August 2017

4828-4833

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Mechanical control of ATP synthase function: activation energy difference between tight and loose binding sites

4 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

ATP synthase with its gamma subunit reduced to the N-terminal helix can still catalyze ATP synthesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Torque generation and elastic power transmission in the rotary F(O)F(1)-ATPase.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Recent developments of the quantum chemical cluster approach for modeling enzyme reactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

The role of the betaDELSEED-loop of ATP synthase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

QM/MM methods for biomolecular systems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

A rotor-stator cross-link in the F1-ATPase blocks the rate-limiting step of rotational catalysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Free energies of chemical reactions in solution and in enzymes with ab initio quantum mechanics/molecular mechanics methods

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

How subunit coupling produces the gamma-subunit rotary motion in F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Determination of the partial reactions of rotational catalysis in F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Ground state structure of F1-ATPase from bovine heart mitochondria at 1.9 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

On possible pitfalls in ab initio quantum mechanics/molecular mechanics minimization approaches for studies of enzymatic reactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

A structure-based model for the synthesis and hydrolysis of ATP by F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Ab initio quantum chemical and mixed quantum mechanics/molecular mechanics (QM/MM) methods for studying enzymatic catalysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

ATP hydrolysis in the betaTP and betaDP catalytic sites of F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Quantum chemical studies of intermediates and reaction pathways in selected enzymes and catalytic synthetic systems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Converting conformational changes to electrostatic energy in molecular motors: The energetics of ATP synthase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

On the Mechanism of ATP Hydrolysis in F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

The missing link between thermodynamics and structure in F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

The molecular mechanism of ATP synthesis by F1F0-ATP synthase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

The structure of the central stalk in bovine F(1)-ATPase at 2.4 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Structure of bovine mitochondrial F(1)-ATPase inhibited by Mg(2+) ADP and aluminium fluoride

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Catalytic site forms and controls in ATP synthase catalysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

The 2.8-A structure of rat liver F1-ATPase: configuration of a critical intermediate in ATP synthesis/hydrolysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Direct observation of the rotation of F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Hypothesis. The mechanism of ATP synthase. Conformational change by rotation of the beta-subunit

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Catalytic sites of Escherichia coli F1-ATPase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064393

Coupling of rotation and catalysis in F(1)-ATPase revealed by single-molecule imaging and manipulation.

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

Mitochondrial ATP synthase. Crystal structure of the catalytic F1 unit in a vanadate-induced transition-like state and implications for mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

Towards accurate ab initio QM/MM calculations of free-energy profiles of enzymatic reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

On the mechanism of hydrolysis of phosphate monoesters dianions in solutions and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

On the energetics of ATP hydrolysis in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

Role of {alpha}-subunit VISIT-DG sequence residues Ser-347 and Gly-351 in the catalytic sites of Escherichia coli ATP synthase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

F1-ATPase changes its conformations upon phosphate release

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

Combining Quantum Mechanics Methods with Molecular Mechanics Methods in ONIOM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

QM/MM: what have we learned, where are we, and where do we go from here?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

Computational Enzymatic Catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010453108

Transition States in a Protein Environment - ONIOM QM:MM Modeling of Isopenicillin N Synthesis

21 January 2018

1 reference

12 December 2020

Inductive and External Electric Field Effects in Pentacoordinated Phosphorus Compounds

1 reference

12 December 2020

A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase

1 reference

12 December 2020

Rate constants and equilibrium constants for the elementary steps of ATP hydrolysis by beef heart mitochondrial ATPase

1 reference

12 December 2020

Thermodynamic analyses of the catalytic pathway of F1-ATPase from Escherichia coli. Implications regarding the nature of energy coupling by F1-ATPases

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1010453108

1 reference

4 August 2017

0 references

1 reference

4 August 2017

1 reference

PubMed ID

21383131