Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation (Q34772944)

4 August 2017

title

Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation (English)

1 reference

4 August 2017

David Swigon

1

1 reference

4 August 2017

Bernard D Coleman

series ordinal

2

1 reference

4 August 2017

Wilma K Olson

series ordinal

3

1 reference

4 August 2017

language of work or name

English

0 references

publication date

19 June 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

4 August 2017

published in

1 reference

4 August 2017

volume

103

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4 August 2017

issue

26

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4 August 2017

page(s)

9879-9884

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Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Fluorescence resonance energy transfer over approximately 130 basepairs in hyperstable lac repressor-DNA loops

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Plasticity in protein-DNA recognition: lac repressor interacts with its natural operator 01 through alternative conformations of its DNA-binding domain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Crystallographic analysis of Lac repressor bound to natural operator O1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

A closer view of the conformation of the Lac repressor bound to operator

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Analysis of a curved DNA constructed from alternating dAn:dTn-tracts in linear and supercoiled form by high resolution chemical probing.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Crystal structure of the lactose operon repressor and its complexes with DNA and inducer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Quality and position of the three lac operators of E. coli define efficiency of repression.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Crystal structure of lac repressor core tetramer and its implications for DNA looping

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Supercoils in prokaryotic DNA restrained in vivo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Cooperative binding of lambda repressors to sites separated by integral turns of the DNA helix

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

DNA supercoiling promotes formation of a bent repression loop in lac DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

lac repressor forms loops with linear DNA carrying two suitably spaced lac operators

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

DNA supercoiling changes the spacing requirement of two lac operators for DNA loop formation with lac repressor.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Multipartite genetic control elements: communication by DNA loop

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Stability of a Lac repressor mediated "looped complex".

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

DNA bending, flexibility, and helical repeat by cyclization kinetics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

X-ray structure of the DNase I-d(GGTATACC)2 complex at 2.3 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

The nature of the accessible and buried surfaces in proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603557103

"Antiparallel" DNA loop in gal repressosome visualized by atomic force microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603557103

Gal repressosome contains an antiparallel DNA loop

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603557103

Energetics of DNA twisting. II. Topoisomer analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603557103

Bacterial repression loops require enhanced DNA flexibility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603557103

Implications of the dependence of the elastic properties of DNA on nucleotide sequence.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

DNA looping and physical constraints on transcription regulation.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

The permanganate oxidation of thymine

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502547

26 October 2018

1 reference

12 December 2020

Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator

1 reference

12 December 2020

Conformation of Lac repressor tetramer in solution, bound and unbound to operator DNA

1 reference

12 December 2020

Co-operative interactions between the catabolite gene activator protein and the lac repressor at the lactose promoter

1 reference

12 December 2020

Designed hyperstable Lac repressor.DNA loop topologies suggest alternative loop geometries

1 reference

12 December 2020

Wrapping of flanking non-operator DNA in lac repressor-operator complexes: implications for DNA looping

1 reference

12 December 2020

Two are better than one

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0603557103

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/fcr6dt6ot5dp3hrddtafhnq4bq

30 July 2022

release_fcr6dt6ot5dp3hrddtafhnq4bq

ADS bibcode

2006PNAS..103.9879S

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/fcr6dt6ot5dp3hrddtafhnq4bq

30 July 2022

https://api.fatcat.wiki/v0/release/fcr6dt6ot5dp3hrddtafhnq4bq

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/fcr6dt6ot5dp3hrddtafhnq4bq

1 reference

30 July 2022