Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses (Q35030377)

5 August 2017

title

Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses (English)

1 reference

5 August 2017

3

Joshua B Plotkin

1 reference

5 August 2017

4

Raul Andino

1 reference

5 August 2017

Michael B Schulte

1

1 reference

5 August 2017

Jeremy A Draghi

series ordinal

2

1 reference

5 August 2017

language of work or name

English

0 references

publication date

30 January 2015

1 reference

5 August 2017

1 reference

5 August 2017

volume

4

1 reference

Single-cell analysis uncovers extensive biological noise in poliovirus replication

5 August 2017

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1 reference

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Mutational and fitness landscapes of an RNA virus revealed through population sequencing

8 July 2018

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8 July 2018

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Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus

8 July 2018

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Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

8 July 2018

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Dynamics of a plant RNA virus intracellular accumulation: stamping machine vs. geometric replication

8 July 2018

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Direct interaction between two viral proteins, the nonstructural protein 2C and the capsid protein VP3, is required for enterovirus morphogenesis

8 July 2018

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8 July 2018

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Cytoplasmic viral replication complexes

8 July 2018

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Viral reorganization of the secretory pathway generates distinct organelles for RNA replication

8 July 2018

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Approximate Bayesian Computation (ABC) in practice.

8 July 2018

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Mutational robustness can facilitate adaptation

8 July 2018

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Simulation-based model selection for dynamical systems in systems and population biology

8 July 2018

1 reference

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ABC: a useful Bayesian tool for the analysis of population data.

8 July 2018

1 reference

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Replication mode and landscape topology differentially affect RNA virus mutational load and robustness

8 July 2018

1 reference

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Insight into poliovirus genome replication and encapsidation obtained from studies of 3B-3C cleavage site mutants

8 July 2018

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Stochastic kinetic modeling of vesicular stomatitis virus intracellular growth

8 July 2018

1 reference

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Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems.

8 July 2018

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Imaging poliovirus entry in live cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Sequential Monte Carlo without likelihoods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

One hundred years of poliovirus pathogenesis

8 July 2018

1 reference

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Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population

8 July 2018

1 reference

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Increased fidelity reduces poliovirus fitness and virulence under selective pressure in mice

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Visualizing the dynamic behavior of poliovirus plus-strand RNA in living host cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Distribution of spontaneous mutants and inferences about the replication mode of the RNA bacteriophage phi6.

8 July 2018

1 reference

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Poliovirus RNA replication requires genome circularization through a protein-protein bridge

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Formation of the poliovirus replication complex requires coupled viral translation, vesicle production, and viral RNA synthesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Interactions of viral protein 3CD and poly(rC) binding protein with the 5' untranslated region of the poliovirus genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Functional coupling between replication and packaging of poliovirus replicon RNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Intracellular localization of poliovirus plus- and minus-strand RNA visualized by strand-specific fluorescent In situ hybridization

8 July 2018

1 reference

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Switch from translation to RNA replication in a positive-stranded RNA virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Poliovirus assembly and encapsidation of genomic RNA.

8 July 2018

1 reference

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Cellular origin and ultrastructure of membranes induced during poliovirus infection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Rates of spontaneous mutation among RNA viruses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

RNA binding properties of poliovirus subviral particles.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Coupling between genome translation and replication in an RNA virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Aspects of the synthesis of poliovirus RNA and the formation of virus particles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Phospholipid biosynthesis and poliovirus genome replication, two coupled phenomena

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Immunocytochemical localization of capsid-related particles in subcellular fractions of poliovirus-infected cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Approximate Bayesian Computation in Evolution and Ecology

8 July 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.03753

Intracellular location and translocation of silent and active poliovirus replication complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.03753

A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.03753

Levels of selection in positive-strand virus dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.03753

The frequency distribution of spontaneous bacteriophage mutants as evidence for the exponential rate of phage reproduction

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.03753

Prisoner's dilemma in an RNA virus

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.03753

The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4311501

Effect of deleterious mutation-accumulation on the fitness of RNA bacteriophage MS2

25 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25635405

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Stochastic vs. deterministic modeling of intracellular viral kinetics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25635405

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Optimal replication of poliovirus within cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25635405

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.03753

1 reference

5 August 2017

1 reference

5 August 2017

1 reference