PredUs: a web server for predicting protein interfaces using structural neighbors (Q35075567)

6 August 2017

PredUs: a web server for predicting protein interfaces using structural neighbors (English)

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6 August 2017

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Qiangfeng Cliff Zhang

1

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6 August 2017

Lei Deng

2

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6 August 2017

Markus Fisher

3

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6 August 2017

Jihong Guan

4

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6 August 2017

Barry Honig

5

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6 August 2017

Donald Petrey

6

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6 August 2017

language of work or name

English

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publication date

23 May 2011

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6 August 2017

Nucleic Acids Research

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6 August 2017

39

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6 August 2017

Web Server issue

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6 August 2017

W283-7

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Creative Commons Attribution-NonCommercial 3.0 Unported

6 August 2017

start time

14 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Protein interface conservation across structure space

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The Pfam protein families database

8 July 2018

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Structural relationships among proteins with different global topologies and their implications for function annotation strategies

8 July 2018

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A survey of available tools and web servers for analysis of protein-protein interactions and interfaces

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

How proteins get in touch: interface prediction in the study of biomolecular complexes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

Principles of protein-protein interactions: what are the preferred ways for proteins to interact?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

Interaction-site prediction for protein complexes: a critical assessment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

Protein binding site prediction using an empirical scoring function

8 July 2018

1 reference

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

8 July 2018

1 reference

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Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data

8 July 2018

1 reference

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Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

AstexViewer: a visualisation aid for structure-based drug design

8 July 2018

1 reference

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The InterPro database, an integrated documentation resource for protein families, domains and functional sites

8 July 2018

1 reference

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Gene ontology: tool for the unification of biology

8 July 2018

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SCOP: a structural classification of proteins database

8 July 2018

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8 July 2018

The Protein Data Bank

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The atomic structure of protein-protein recognition sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

Analysis of protein-protein interaction sites using surface patches

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

Protein-protein interfaces: architectures and interactions in protein-protein interfaces and in protein cores. Their similarities and differences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

ProMate: a structure based prediction program to identify the location of protein-protein binding sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

PQS: a protein quaternary structure file server

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125747

27 September 2018

Identifiers

DOI

10.1093/NAR/GKR311

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journals/nar/ZhangDFGHP11

6 August 2017

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

6 August 2017

1 reference