Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling. (Q35082275)

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4 March 2020

title

Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling (English)

1 reference

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4 March 2020

1 reference

1 reference

2

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4 March 2020

Dmitry A. Bolotin

5

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4 March 2020

Ekaterina V. Putintseva

6

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4 March 2020

Yuri Lebedev

7

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4 March 2020

Dmitry M. Chudakov

8

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4 March 2020

author name string

Ilgar Z Mamedov

1

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4 March 2020

Ivan V Zvyagin

3

1 reference

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4 March 2020

Maria A Turchaninova

4

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4 March 2020

publication date

23 December 2013

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4 March 2020

published in

Frontiers in Immunology

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4 March 2020

volume

4

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4 March 2020

page(s)

456

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High-throughput identification of antigen-specific TCRs by TCR gene capture

4 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Pairing of T-cell receptor chains via emulsion PCR.

8 July 2018

1 reference

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Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Deep sequencing of antiviral T-cell responses to HCMV and EBV in humans reveals a stable repertoire that is maintained for many years.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Counting absolute numbers of molecules using unique molecular identifiers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Ex vivo characterization and isolation of rare memory B cells with antigen tetramers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Quantitative tracking of T cell clones after haematopoietic stem cell transplantation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

By-passing in vitro screening--next generation sequencing technologies applied to antibody display and in silico candidate selection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Overlap and effective size of the human CD8+ T cell receptor repertoire

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Individual characterization of stably expanded T cell clones in ankylosing spondylitis patients.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Multiplex polymerase chain reaction: a practical approach

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Multiplex PCR: optimization and application in diagnostic virology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Amplification of cDNA ends based on template-switching effect and step-out PCR.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Transcriptional and post-transcriptional regulation of TcR, CD4 and CD8 gene expression during activation of normal human T lymphocytes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

MiTCR: software for T-cell receptor sequencing data analysis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Wrestling with the repertoire: the promise and perils of next generation sequencing for antigen receptors

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

A novel approach to the analysis of specificity, clonality, and frequency of HIV-specific T cell responses reveals a potential mechanism for control of viral escape.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Nested polymerase chain reaction assay for the detection of cytomegalovirus overcomes false positives caused by contamination with fragmented DNA.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

First autologous hematopoietic SCT for ankylosing spondylitis: a case report and clues to understanding the therapy

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

Single high-dose treatment with glucosaminyl-muramyl dipeptide is ineffective in treating ankylosing spondylitis

9 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870325

CD3-gamma, -delta, -epsilon, -zeta, T-cell receptor-alpha and -beta transcripts are independently regulated during thymocyte ontogeny and T-cell activation

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24391640

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Parallel detection of antigen-specific T cell responses by combinatorial encoding of MHC multimers

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24391640

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

[Highly-effective subtractive hybridization of cDNA]

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24391640

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FIMMU.2013.00456

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24391640%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24391640%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

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