Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome (Q35103868)

6 August 2017

title

Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome (English)

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cryogenic electron microscopy

6 August 2017

main subject

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5

Joachim Frank

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author name string

Sukhjit Kaur

1

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6 August 2017

Reynald Gillet

2

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6 August 2017

Wen Li

3

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6 August 2017

Richard Gursky

4

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6 August 2017

language of work or name

English

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publication date

20 October 2006

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Proceedings of the National Academy of Sciences of the United States of America

6 August 2017

published in

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6 August 2017

volume

103

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6 August 2017

issue

44

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6 August 2017

page(s)

16484-16489

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Small protein B interacts with the large and the small subunits of a stalled ribosome during trans-translation

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

NMR structure of the Aquifex aeolicus tmRNA pseudoknot PK1: new insights into the recoding event of the ribosomal trans-translation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

tmRNA and associated ligands: a puzzling relationship.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Transfer-messenger RNA unfolds as it transits the ribosome

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Pre-binding of small protein B to a stalled ribosome triggers trans-translation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Visualizing tmRNA entry into a stalled ribosome

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

SmpB: a protein that binds to double-stranded segments in tmRNA and tRNA.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

SmpB functions in various steps of trans-translation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

9 July 2018

tmRDB (tmRNA database).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Solution structure of the E. coli 70S ribosome at 11.5 A resolution

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

The tmRNA database (tmRDB).

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618813

Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu.

9 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607438103

Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607438103

Simultaneous and functional binding of SmpB and EF-Tu-TP to the alanyl acceptor arm of tmRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607438103

The role of SmpB protein in trans-translation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607438103

Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607438103

Interaction analysis between tmRNA and SmpB from Thermus thermophilus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607438103

Stepping Transfer Messenger RNA through the Ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607438103

21 January 2018

Identifiers

DOI

10.1073/PNAS.0607438103

1 reference

6 August 2017

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6 August 2017

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