Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data (Q35119093)

6 August 2017

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data (English)

1 reference

6 August 2017

1 reference

5

Claire O'Donovan

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Cecilia Arighi

Cecilia N Arighi

3

0 references

Sylvain Poux

Sylvain Poux

1

0 references

Alan J Bridge

Alan Bridge

4

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Michele Magrane

Michele Magrane

2

0 references

0 references

0 references

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7

UniProt Consortium

1 reference

ORCID Public Data File 2021

6 August 2017

1 reference

Ioannis Xenarios

1 reference

ORCID Public Data File 2021

Lucila Aimo

1 reference

ORCID Public Data File 2021

author name string

Kati Laiho

6

1 reference

6 August 2017

12 March 2014

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6 August 2017

1 reference

6 August 2017

2014

1 reference

6 August 2017

bau016

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

6 August 2017

1 reference

RefSeq: an update on mammalian reference sequences

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Activities at the Universal Protein Resource (UniProt)

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Ureidoglycolate hydrolase, amidohydrolase, lyase: how errors in biological databases are incorporated in scientific papers and vice versa

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Fifty-five years of enzyme classification: advances and difficulties.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

An acetylome peptide microarray reveals specificities and deacetylation substrates for all human sirtuin isoforms

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

HAMAP in 2013, new developments in the protein family classification and annotation system

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Quality of computationally inferred gene ontology annotations

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Drug development: Raise standards for preclinical cancer research

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Solving the Problem: Genome Annotation Standards before the Data Deluge

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

The UniProt-GO Annotation database in 2011.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Saccharomyces Genome Database: the genomics resource of budding yeast

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Plasmodium falciparum Sir2A Preferentially Hydrolyzes Medium and Long Chain Fatty Acyl Lysine

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

The first identification of lysine malonylation substrates and its regulatory enzyme

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Believe it or not: how much can we rely on published data on potential drug targets?

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Testing the ortholog conjecture with comparative functional genomic data from mammals

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

UniProt Knowledgebase: a hub of integrated protein data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

SIRT5 Deacetylates carbamoyl phosphate synthetase 1 and regulates the urea cycle

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Substrates and regulation mechanisms for the human mitochondrial sirtuins Sirt3 and Sirt5

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

The RESID Database of Protein Modifications as a resource and annotation tool

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

Sirtuins: Sir2-related NAD-dependent protein deacetylases

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

The PSI-MOD community standard for representation of protein modification data.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950660

SIRT5 deacetylates and activates urate oxidase in liver mitochondria of mice

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAU016

Enhancing reproducibility

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24622611

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DATABASE/BAU016

1 reference

6 August 2017

1 reference

6 August 2017

1 reference

PubMed ID

24622611