We can't all be supermodels: the value of comparative transcriptomics to the study of non-model insects. (Q35251388)

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25 February 2020

review article

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24 December 2020

We can't all be supermodels: the value of comparative transcriptomics to the study of non-model insects (English)

1 reference

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24 December 2020

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22 October 2019

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1

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25 February 2020

Sabrina Simon

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3

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Rob DeSalle

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author name string

Richard H Baker

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publication date

19 December 2014

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1 April 2015

1 reference

24 December 2020

Insect Molecular Biology

3 references

22 October 2019

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24

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issue

2

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page(s)

139-154

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Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International

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copyright license

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22 October 2019

Comparison of normalization methods for differential gene expression analysis in RNA-Seq experiments: A matter of relative size of studied transcriptomes.

24 December 2020

cites work

1 reference

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Daily rhythms in antennal protein and olfactory sensitivity in the malaria mosquito Anopheles gambiae.

27 July 2018

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The importance of tissue specificity for RNA-seq: highlighting the errors of composite structure extractions

27 July 2018

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Mechanisms of macroevolution: polyphagous plasticity in butterfly larvae revealed by RNA-Seq

27 July 2018

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Masculinization of the x chromosome in the pea aphid

27 July 2018

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Global transcriptome analysis of orange wheat blossom midge, Sitodiplosis mosellana (Gehin) (Diptera: Cecidomyiidae) to identify candidate transcripts regulating diapause

27 July 2018

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RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus

27 July 2018

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Detoxification activity and energy cost is attenuated in whiteflies feeding on tomato yellow leaf curl China virus-infected tobacco plants

27 July 2018

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27 July 2018

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Differential impacts of juvenile hormone, soldier head extract and alternate caste phenotypes on host and symbiont transcriptome composition in the gut of the termite Reticulitermes flavipes.

27 July 2018

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Transcriptome sequencing as a platform to elucidate molecular components of the diapause response in the Asian tiger mosquito, Aedes albopictus

27 July 2018

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Reversal of an ancient sex chromosome to an autosome in Drosophila

27 July 2018

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Invasive Harlequin Ladybird Carries Biological Weapons Against Native Competitors

27 July 2018

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Developmental gene discovery in a hemimetabolous insect: de novo assembly and annotation of a transcriptome for the cricket Gryllus bimaculatus

27 July 2018

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Blood meal-induced changes to antennal transcriptome profiles reveal shifts in odor sensitivities in Anopheles gambiae

27 July 2018

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Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

27 July 2018

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Sex-biased gene expression during head development in a sexually dimorphic stalk-eyed fly.

27 July 2018

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The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens

27 July 2018

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RNA-Seq: revelation of the messengers

27 July 2018

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Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes

27 July 2018

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Autophagy in Antarctica: combating dehydration stress in the world's southernmost insect

27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Differential expression of two antifreeze proteins in the desert beetle Anatolica polita (Coleoptera: Tenebriondae): seasonal variation and environmental effects.

27 July 2018

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Characterization of head transcriptome and analysis of gene expression involved in caste differentiation and aggression in Odontotermes formosanus (Shiraki)

27 July 2018

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Pyrosequencing-based transcriptome analysis of the asian rice gall midge reveals differential response during compatible and incompatible interaction

27 July 2018

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Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

27 July 2018

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A novel function - thermal protective properties of an antifreeze protein from the summer desert beetle Microdera punctipennis

27 July 2018

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Patterns of transcriptome divergence in the male accessory gland of two closely related species of field crickets.

27 July 2018

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Population and sex differences in Drosophila melanogaster brain gene expression

27 July 2018

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27 July 2018

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Transcriptional profiles of mating-responsive genes from testes and male accessory glands of the Mediterranean fruit fly, Ceratitis capitata

27 July 2018

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Incomplete sex chromosome dosage compensation in the Indian meal moth, Plodia interpunctella, based on de novo transcriptome assembly

27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Retrogenes moved out of the z chromosome in the silkworm

27 July 2018

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Population transcriptomics of cactus host shifts in Drosophila mojavensis

27 July 2018

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27 July 2018

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The transcriptome of Lutzomyia longipalpis (Diptera: Psychodidae) male reproductive organs

27 July 2018

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27 July 2018

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27 July 2018

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Sex chromosomes evolved from independent ancestral linkage groups in winged insects

27 July 2018

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Insights into the transcriptomics of polyphagy: Bemisia tabaci adaptability to phenylpropanoids involves coordinated expression of defense and metabolic genes

27 July 2018

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Sex chromosome evolution in moths and butterflies

27 July 2018

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Microarray-based transcriptomic analysis of differences between long-term gregarious and solitarious desert locusts

27 July 2018

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Transcriptome profiling of female alates and egg-laying queens of the Formosan subterranean termite.

27 July 2018

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Decoupling of rapid and adaptive evolution among seminal fluid proteins in heliconius butterflies with divergent mating systems

27 July 2018

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27 July 2018

Polyphenism in insects

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Single-molecule direct RNA sequencing without cDNA synthesis

27 July 2018

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Differential expression in RNA-seq: a matter of depth

27 July 2018

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Next-generation transcriptome assembly

27 July 2018

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The fat body transcriptomes of the yellow fever mosquito Aedes aegypti, pre- and post- blood meal

27 July 2018

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A comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector, Anopheles gambiae

27 July 2018

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Genes involved in convergent evolution of eusociality in bees

27 July 2018

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Taxonomically restricted genes are associated with the evolution of sociality in the honey bee.

27 July 2018

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CSP and takeout genes modulate the switch between attraction and repulsion during behavioral phase change in the migratory locust.

27 July 2018

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The developmental transcriptome of Drosophila melanogaster

27 July 2018

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Gene discovery in the horned beetle Onthophagus taurus

27 July 2018

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Evolution of sex chromosomes in insects

27 July 2018

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Comparative Genomic Hybridization (CGH) reveals a neo-X chromosome and biased gene movement in stalk-eyed flies (genus Teleopsis).

27 July 2018

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Evolution of sexual dimorphism in the Lepidoptera

27 July 2018

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Hyperexpression of the X chromosome in both sexes results in extensive female bias of X-linked genes in the flour beetle

27 July 2018

1 reference

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Deconstructing the superorganism: social physiology, groundplans, and sociogenomics

27 July 2018

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Male sex drive and the maintenance of sex: evidence from Drosophila

27 July 2018

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Transcriptome analysis of the sex pheromone gland of the noctuid moth Heliothis virescens

27 July 2018

1 reference

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Viral infection of tobacco plants improves performance of Bemisia tabaci but more so for an invasive than for an indigenous biotype of the whitefly

27 July 2018

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Lifetime monogamy and the evolution of eusociality

27 July 2018

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Sugar sweet springtails: on the transcriptional response of Folsomia candida (Collembola) to desiccation stress

27 July 2018

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Molecular mechanisms of gene regulation during Drosophila spermatogenesis

27 July 2018

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Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae)

27 July 2018

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De novo transcriptome assembly with ABySS.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

A Gene Necessary for Reproductive Suppression in Termites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

The silkworm Z chromosome is enriched in testis-specific genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Intralocus sexual conflict

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Genes with social effects are expected to harbor more sequence variation within and between species

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Cowpea bruchid midgut transcriptome response to a soybean cystatin--costs and benefits of counter-defence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Dosage analysis of Z chromosome genes using microarray in silkworm, Bombyx mori

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

RNA-Seq: a revolutionary tool for transcriptomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Genetic and genomic analyses of the division of labour in insect societies

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Demasculinization of X chromosomes in the Drosophila genus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Constraint and turnover in sex-biased gene expression in the genus Drosophila

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

The evolution of sex-biased genes and sex-biased gene expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Evo-devo and the evolution of social behavior

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

A dynamic view of sex chromosome evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Steps in the evolution of heteromorphic sex chromosomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Reproductive ground plan may mediate colony-level selection effects on individual foraging behavior in honey bees

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Rapid evolution of male-biased gene expression in Drosophila

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Paucity of genes on the Drosophila X chromosome showing male-biased expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Gene expression and the evolution of insect polyphenisms

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Sexually antagonistic genes: experimental evidence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Evolution at two levels in humans and chimpanzees

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Cloning and expression profiling of odorant-binding proteins in the tarnished plant bug, Lygus lineolaris

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

New genes as drivers of phenotypic evolution

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

The Nap family proteins, CG5017/Hanabi and Nap1, are essential for Drosophila spermiogenesis

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Tissue-specific transcriptomics in the field cricket Teleogryllus oceanicus

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Identification of cold-responsive genes in a New Zealand alpine stick insect using RNA-Seq

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Gene expression changes governing extreme dehydration tolerance in an Antarctic insect

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

A mechanism of extreme growth and reliable signaling in sexually selected ornaments and weapons.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Cyp15F1: a novel cytochrome P450 gene linked to juvenile hormone-dependent caste differention in the termite Reticulitermes flavipes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Molecular determinants of scouting behavior in honey bees

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Selective sweep of a cis-regulatory sequence in a non-African population of Drosophila melanogaster

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Nutrition and division of labor: Effects on foraging and brain gene expression in the paper wasp Polistes metricus.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Full-length transcriptome assembly from RNA-Seq data without a reference genome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Getting a full dose? Reconsidering sex chromosome dosage compensation in the silkworm, Bombyx mori

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Social immunity in honeybees (Apis mellifera): transcriptome analysis of varroa-hygienic behaviour.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

De novo analysis of transcriptome dynamics in the migratory locust during the development of phase traits

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Evolution of gene expression in fire ants: the effects of developmental stage, caste, and species.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Function and evolution of sex determination mechanisms, genes and pathways in insects

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Combined EST and proteomic analysis identifies rapidly evolving seminal fluid proteins in Heliconius butterflies

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Brain transcriptomic analysis in paper wasps identifies genes associated with behaviour across social insect lineages.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: a consequence of dosage compensation?

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Alternative isoform regulation in human tissue transcriptomes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

The making of a queen: TOR pathway is a key player in diphenic caste development

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

Effects of sensory stimuli on the behavioural phase state of the desert locust, Schistocerca gregaria

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383654

The evolution of sex chromosomes

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FIMB.12154

The Evolution of Animal Weapons

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FIMB.12154

Sexual Dimorphism, Sexual Selection, and Adaptation in Polygenic Characters

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FIMB.12154

Sex-dependent gene expression and evolution of the Drosophila transcriptome

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25524309

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1111/IMB.12154

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524309%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524309%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

PubMed publication ID

25524309

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524309%20AND%20SRC:MED&resulttype=core&format=json