Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis (Q35345094)

7 August 2017

title

Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis (English)

1 reference

7 August 2017

Chunlai Chen

1

1 reference

7 August 2017

Benjamin Stevens

2

1 reference

7 August 2017

Jaskiran Kaur

3

1 reference

7 August 2017

Zeev Smilansky

4

1 reference

7 August 2017

Barry S Cooperman

5

1 reference

7 August 2017

Yale E Goldman

6

1 reference

7 August 2017

language of work or name

English

0 references

publication date

3 October 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

7 August 2017

published in

1 reference

7 August 2017

volume

108

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7 August 2017

issue

41

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7 August 2017

page(s)

16980-16985

1 reference

Fluorescent labeling of tRNA dihydrouridine residues: Mechanism and distribution

7 August 2017

cites work

1 reference

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Single-molecule fluorescence measurements of ribosomal translocation dynamics.

12 July 2018

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mRNA translocation occurs during the second step of ribosomal intersubunit rotation

12 July 2018

1 reference

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Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites

12 July 2018

1 reference

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Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy

12 July 2018

1 reference

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Real-time tRNA transit on single translating ribosomes at codon resolution

12 July 2018

1 reference

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Structure and dynamics of a processive Brownian motor: the translating ribosome

12 July 2018

1 reference

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Single ribosome dynamics and the mechanism of translation

12 July 2018

1 reference

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Interrupted catalysis: the EF4 (LepA) effect on back-translocation

12 July 2018

1 reference

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What recent ribosome structures have revealed about the mechanism of translation

12 July 2018

1 reference

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Structures of the ribosome in intermediate states of ratcheting

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Formation of the First Peptide Bond: The Structure of EF-P Bound to the 70S Ribosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Does the ribosome have initiation and elongation modes of translation?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Fidelity at the molecular level: lessons from protein synthesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Single-molecule observations of ribosome function

12 July 2018

1 reference

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Following movement of the L1 stalk between three functional states in single ribosomes.

12 July 2018

1 reference

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A new tRNA intermediate revealed on the ribosome during EF4-mediated back-translocation

12 July 2018

1 reference

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Programmed drug-dependent ribosome stalling

12 July 2018

1 reference

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Synthesis and functional activity of tRNAs labeled with fluorescent hydrazides in the D-loop

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

A role for the 30S subunit E site in maintenance of the translational reading frame

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

A structural view of translation initiation in bacteria

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Structure of ratcheted ribosomes with tRNAs in hybrid states

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Shine-Dalgarno interaction prevents incorporation of noncognate amino acids at the codon following the AUG

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

The kinetics of ribosomal peptidyl transfer revisited

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Spontaneous intersubunit rotation in single ribosomes.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

A practical guide to single-molecule FRET

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

A new kinetic model reveals the synergistic effect of E-, P- and A-sites on +1 ribosomal frameshifting

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

A quantitative kinetic scheme for 70 S translation initiation complex formation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Intersubunit movement is required for ribosomal translocation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Kinetically competent intermediates in the translocation step of protein synthesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

The highly conserved LepA is a ribosomal elongation factor that back-translocates the ribosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

The E-site story: the importance of maintaining two tRNAs on the ribosome during protein synthesis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

The ribosome's response to codon-anticodon mismatches.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Ribosome dynamics: insights from atomic structure modeling into cryo-electron microscopy maps

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Decoding errors and the involvement of the E-site

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

The hybrid state of tRNA binding is an authentic translation elongation intermediate

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Molecular localization of a ribosome-dependent ATPase on Escherichia coli ribosomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Function of the ribosomal E-site: a mutagenesis study

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Mechanisms of elongation on the ribosome: dynamics of a macromolecular machine

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

tRNA dynamics on the ribosome during translation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Protein conformational dynamics probed by single-molecule electron transfer.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Locking and unlocking of ribosomal motions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Ribosome structure and the mechanism of translation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

A ratchet-like inter-subunit reorganization of the ribosome during translocation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

The "allosteric three-site model" of elongation cannot be confirmed in a well-defined ribosome system from Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

The elongating ribosome: structural and functional aspects

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Substrate-induced hysteresis in the activity of Escherichia coli dihydrofolate reductase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Intermediate states in the movement of transfer RNA in the ribosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

The allosteric three-site model for the ribosomal elongation cycle: features and future

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Question 7: optimized energy consumption for protein synthesis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Peptidyl-tRNA regulates the GTPase activity of translation factors

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193197

Synergism between the GTPase activities of EF-Tu.GTP and EF-G.GTP on empty ribosomes. Elongation factors as stimulators of the ribosomal oscillation between two conformations

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21969541

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1106999108

1 reference

7 August 2017

0 references

1 reference

7 August 2017

1 reference