Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes (Q35601745)

9 August 2017

Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes (English)

1 reference

9 August 2017

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15

William M Shih

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9 August 2017

16

Peng Yin

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9 August 2017

Brian J Beliveau

1

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David Colognori

object named as

David Colognori

13

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Caroline Kim-Kiselak

7

object named as

Caroline Kim-Kiselak

1 reference

9 August 2017

14

Jeannie T Lee

1 reference

9 August 2017

Alistair N Boettiger

2

1 reference

9 August 2017

Maier S Avendaño

3

1 reference

9 August 2017

Ralf Jungmann

4

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9 August 2017

Ruth B McCole

5

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9 August 2017

Eric F Joyce

6

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9 August 2017

Frédéric Bantignies

8

1 reference

9 August 2017

Chamith Y Fonseka

9

1 reference

9 August 2017

Jelena Erceg

10

1 reference

9 August 2017

Mohammed A Hannan

11

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9 August 2017

Hien G Hoang

12

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9 August 2017

Xiaowei Zhuang

17

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9 August 2017

Chao-ting Wu

18

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9 August 2017

language of work or name

English

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publication date

12 May 2015

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9 August 2017

Nature Communications

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9 August 2017

6

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9 August 2017

7147

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Creative Commons Attribution 4.0 International

9 August 2017

start time

12 May 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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exact match

https://scigraph.springernature.com/pub.10.1038/ncomms8147

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cites work

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Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription

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Methods for the preparation of large quantities of complex single-stranded oligonucleotide libraries

27 July 2018

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Visualizing genomes with Oligopaint FISH probes

27 July 2018

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Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT

27 July 2018

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In situ mutation detection and visualization of intratumor heterogeneity for cancer research and diagnostics

27 July 2018

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Super-resolution fluorescence imaging of telomeres reveals TRF2-dependent T-loop formation

27 July 2018

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Allele-specific detection of single mRNA molecules in situ

27 July 2018

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Visualizing SNVs to quantify allele-specific expression in single cells

27 July 2018

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FGF signalling regulates chromatin organisation during neural differentiation via mechanisms that can be uncoupled from transcription

27 July 2018

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Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes

27 July 2018

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Super-resolution imaging reveals three-dimensional folding dynamics of the β-globin locus upon gene activation

27 July 2018

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The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives fo

27 July 2018

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

27 July 2018

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New and Xisting regulatory mechanisms of X chromosome inactivation

27 July 2018

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The Drosophila melanogaster Genetic Reference Panel

27 July 2018

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Nonlinear structured-illumination microscopy with a photoswitchable protein reveals cellular structures at 50-nm resolution

27 July 2018

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X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription

27 July 2018

1 reference

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Super-resolution fluorescence microscopy as a tool to study the nanoscale organization of chromosomes

27 July 2018

1 reference

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Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis

27 July 2018

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Mouse genomic variation and its effect on phenotypes and gene regulation

27 July 2018

1 reference

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Combining FISH with localisation microscopy: Super-resolution imaging of nuclear genome nanostructures

27 July 2018

1 reference

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Visualization of fine-scale genomic structure by oligonucleotide-based high-resolution FISH.

27 July 2018

1 reference

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Breaking the diffraction barrier: super-resolution imaging of cells

27 July 2018

1 reference

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Single-molecule kinetics and super-resolution microscopy by fluorescence imaging of transient binding on DNA origami

27 July 2018

1 reference

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Preparation of Drosophila polytene chromosome squashes for antibody labeling

27 July 2018

1 reference

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Cytological analysis of meiosis in fixed Drosophila ovaries

27 July 2018

1 reference

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A FRET-based assay for characterization of alternative splicing events using peptide nucleic acid fluorescence in situ hybridization

27 July 2018

1 reference

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Design of 240,000 orthogonal 25mer DNA barcode probes

27 July 2018

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Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

27 July 2018

1 reference

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Multicolor super-resolution imaging with photo-switchable fluorescent probes

27 July 2018

1 reference

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Wide-field subdiffraction imaging by accumulated binding of diffusing probes

27 July 2018

1 reference

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Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)

27 July 2018

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A haplotype map of the human genome

27 July 2018

1 reference

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Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes

27 July 2018

1 reference

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Homologous pairing and chromosome dynamics in meiosis and mitosis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

FISHing with locked nucleic acids (LNA): evaluation of different LNA/DNA mixmers

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Fluorescence in situ hybridization: past, present and future

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Cytochemical nucleic acid research during the twentieth century

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Homologous chromosome pairing in Drosophila melanogaster proceeds through multiple independent initiations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Formation and detection of RNA-DNA hybrid molecules in cytological preparations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

A recombinant murine retrovirus for simian virus 40 large T cDNA transforms mouse fibroblasts to anchorage-independent growth

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

A high-density 3D localization algorithm for stochastic optical reconstruction microscopy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

PSFj: know your fluorescence microscope.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

The regulation of Hox gene expression during animal development

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Mammalian genomic imprinting.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

COMBO-FISH enables high precision localization microscopy as a prerequisite for nanostructure analysis of genome loci

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Microscopy and its focal switch.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Highly inclined thin illumination enables clear single-molecule imaging in cells.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

A second generation human haplotype map of over 3.1 million SNPs

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Short-Range Spectroscopic Ruler Based on a Single-Molecule Optical Switch

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Allele-specific detection of nascent transcripts by fluorescence in situ hybridization reveals temporal and culture-induced changes in Igf2 imprinting during pre-implantation mouse development.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Controlled hot start and improved specificity in carrying out PCR utilizing touch-up and loop incorporated primers (TULIPS).

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

The bithorax complex: the first fifty years

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

Perturbation of nuclear architecture by long-distance chromosome interactions.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4430122

The pain of social disconnection: examining the shared neural underpinnings of physical and social pain

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS8147

The pivot algorithm: A highly efficient Monte Carlo method for the self-avoiding walk

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS8147

Visualization of oligonucleotide probes and point mutations in interphase nuclei and DNA fibers using rolling circle DNA amplification

21 January 2018

1 reference

12 December 2020

Single-copy gene detection using branched DNA (bDNA) in situ hybridization

1 reference

12 December 2020

In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes

1 reference

12 December 2020

Padlock probes reveal single-nucleotide differences, parent of origin and in situ distribution of centromeric sequences in human chromosomes 13 and 21

1 reference

12 December 2020

Mechanisms and consequences of widespread random monoallelic expression

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCOMMS8147

1 reference

Dimensions Publication ID

9 August 2017

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0 references

1 reference

9 August 2017

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