dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes (Q35667350)

9 August 2017

dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes (English)

1 reference

9 August 2017

Anton Bankevich

2

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Yana Safonova

object named as

Yana Safonova

series ordinal

1

0 references

Pavel A. Pevzner

series ordinal

3

object named as

Pavel A Pevzner

1 reference

9 August 2017

3 March 2015

1 reference

Journal of Computational Biology

9 August 2017

1 reference

9 August 2017

22

1 reference

9 August 2017

6

1 reference

9 August 2017

528-545

1 reference

ExSPAnder: a universal repeat resolver for DNA fragment assembly

9 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

GAGE-B: an evaluation of genome assemblers for bacterial organisms

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

QUAST: quality assessment tool for genome assemblies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

GAGE: A critical evaluation of genome assemblies and assembly algorithms

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

How to apply de Bruijn graphs to genome assembly

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

Genome sequence of the model mushroom Schizophyllum commune

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

Optimal algorithms for haplotype assembly from whole-genome sequence data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

Detecting heterozygosity in shotgun genome assemblies: Lessons from obligately outcrossing nematodes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

An MCMC algorithm for haplotype assembly from whole-genome sequence data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

A model of higher accuracy for the individual haplotyping problem based on weighted SNP fragments and genotype with errors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

Assembly of polymorphic genomes: algorithms and application to Ciona savignyi

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

Mauve: multiple alignment of conserved genomic sequence with rearrangements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

ARACHNE: a whole-genome shotgun assembler

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

An Eulerian path approach to DNA fragment assembly

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

Haplotype assembly from aligned weighted SNP fragments.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449708

25 September 2018

Identifiers

DOI

10.1089/CMB.2014.0153

1 reference

journals/jcb/SafonovaBP15

9 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

9 August 2017

1 reference

PubMed ID

25734602