A helical processing pipeline for EM structure determination of membrane proteins (Q35683176)

9 August 2017

1 reference

title

A helical processing pipeline for EM structure determination of membrane proteins (English)

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9 August 2017

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6

Bridget Carragher

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9 August 2017

2

Andrew Ward

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9 August 2017

Lauren S Fisher

1

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9 August 2017

Ronald A Milligan

series ordinal

3

1 reference

9 August 2017

Nigel Unwin

series ordinal

4

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9 August 2017

Clinton S Potter

series ordinal

5

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9 August 2017

publication date

20 September 2011

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9 August 2017

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9 August 2017

volume

55

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9 August 2017

issue

4

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9 August 2017

page(s)

350-362

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Hydrogen-bonding networks and RNA bases revealed by cryo electron microscopy suggest a triggering mechanism for calcium switches

9 August 2017

cites work

1 reference

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Atomic resolution cryo electron microscopy of macromolecular complexes

27 July 2018

1 reference

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Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy

27 July 2018

1 reference

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Reconstruction of Helical Filaments and Tubes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Fourier–Bessel Reconstruction of Helical Assemblies

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

3.3 A cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Electron crystallography as a technique to study the structure on membrane proteins in a lipidic environment.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Appion: an integrated, database-driven pipeline to facilitate EM image processing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Nucleotide dependent packing differences in helical crystals of the ABC transporter MsbA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Electron crystallography of proteins in membranes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Visualization of dynamins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

The structure of an archaeal pilus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Retrospective: radiation damage and its associated "information limitations".

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

A test-bed for optimizing high-resolution single particle reconstructions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Towards atomic resolution structural determination by single-particle cryo-electron microscopy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Modeling experimental image formation for likelihood-based classification of electron microscopy data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Three-dimensional structure of a human connexin26 gap junction channel reveals a plug in the vestibule

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Structural analysis of membrane protein complexes by single particle electron microscopy.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Visualizing flexibility at molecular resolution: analysis of heterogeneity in single-particle electron microscopy reconstructions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

The iterative helical real space reconstruction method: surmounting the problems posed by real polymers

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Cryo-electron microscopy studies of human TFIID: conformational breathing in the integration of gene regulatory cues

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Lipid-protein interactions in double-layered two-dimensional AQP0 crystals

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

The pore structure of the closed RyR1 channel

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

The 5A structure of heterologously expressed plant aquaporin SoPIP2;1.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Refined structure of the nicotinic acetylcholine receptor at 4A resolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

MsbA-dependent translocation of lipids across the inner membrane of Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Structure and gating mechanism of the acetylcholine receptor pore

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Accurate determination of local defocus and specimen tilt in electron microscopy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Molecular Architecture of the Multiprotein Splicing Factor SF3b

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Three-dimensional structure of the bacterial protein-translocation complex SecYEG

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

A structural model for the catalytic cycle of Ca(2+)-ATPase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

An Escherichia coli mutant defective in lipid export

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Structural determinants of water permeation through aquaporin-1

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Leginon: a system for fully automated acquisition of 1000 electron micrographs a day.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

MRC image processing programs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Three-dimensional structure of a single filament in the Limulus acrosomal bundle: scruin binds to homologous helix-loop-beta motifs in actin

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Biochemistry of multidrug resistance mediated by the multidrug transporter

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Determination of the alpha-actinin-binding site on actin filaments by cryoelectron microscopy and image analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Structural relationships of actin, myosin, and tropomyosin revealed by cryo-electron microscopy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Automation in single-particle electron microscopy connecting the pieces.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Atomic Structure of Human Adenovirus by Cryo-EM Reveals Interactions Among Protein Networks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Structural mapping of spliceosomes by electron microscopy

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Application of the iterative helical real-space reconstruction method to large membranous tubular crystals of P-type ATPases

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Structural basis for detoxification and oxidative stress protection in membranes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

ACE: automated CTF estimation

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Automated molecular microscopy: the new Leginon system

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Windex: a toolset for indexing helices

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Activation of the nicotinic acetylcholine receptor involves a switch in conformation of the alpha subunits.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Leginon: an automated system for acquisition of images from vitreous ice specimens.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

SUPRIM: easily modified image processing software.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Helical processing using PHOELIX.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

Structure of bacterial flagellar filaments at 11 A resolution: packing of the alpha-helices

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3262078

25 September 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.09.013

PHOELIX: a package for semi-automated helical reconstruction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.09.013

Three-dimensional reconstruction of F-actin, thin filaments and decorated thin filaments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.09.013

Reconstruction of three-dimensional images from electron micrographs of structures with helical symmetry

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.09.013

Nicotinic acetylcholine receptor at 9 A resolution.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.09.013

Structure determination of tubular crystals of membrane proteins. I. Indexing of diffraction patterns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.09.013

10.1016/J.YMETH.2011.09.013

7 January 2021

Identifiers

DOI

1 reference

9 August 2017

1 reference

9 August 2017

1 reference