InteMAP: Integrated metagenomic assembly pipeline for NGS short reads (Q35739360)

26250558

10 August 2017

title

InteMAP: Integrated metagenomic assembly pipeline for NGS short reads (English)

1 reference

10 August 2017

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

author name string

Fumeng Wang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Xiaoqi Wang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Liping Duan

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Huaiqiu Zhu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

publication date

7 August 2015

1 reference

10 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

page(s)

244

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

31 May 2020

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Assessment of metagenomic assembly using simulated next generation sequencing data

12 July 2018

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Efficient de novo assembly of large genomes using compressed data structures

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Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

12 July 2018

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Graph accordance of next-generation sequence assemblies

12 July 2018

1 reference

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Evaluation of short read metagenomic assembly

12 July 2018

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Bambus 2: scaffolding metagenomes

12 July 2018

1 reference

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Evaluating the fidelity of de novo short read metagenomic assembly using simulated data

12 July 2018

1 reference

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Taxonomic metagenome sequence assignment with structured output models

12 July 2018

1 reference

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Quake: quality-aware detection and correction of sequencing errors

12 July 2018

1 reference

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A catalog of reference genomes from the human microbiome

12 July 2018

1 reference

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Ab initio gene identification in metagenomic sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Assembly algorithms for next-generation sequencing data

12 July 2018

1 reference

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A human gut microbial gene catalogue established by metagenomic sequencing

12 July 2018

1 reference

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De novo assembly of human genomes with massively parallel short read sequencing

12 July 2018

1 reference

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PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

A bioinformatician's guide to metagenomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

MetaSim: a sequencing simulator for genomics and metagenomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

12 July 2018

1 reference

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Genome assembly forensics: finding the elusive mis-assembly

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Comparative metagenomics of microbial communities

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Environmental genome shotgun sequencing of the Sargasso Sea

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Community structure and metabolism through reconstruction of microbial genomes from the environment

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Versatile and open software for comparing large genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

A whole-genome assembly of Drosophila

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

An extended genovo metagenomic assembler by incorporating paired-end information

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Genovo: de novo assembly for metagenomes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Aggressive assembly of pyrosequencing reads with mates

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

25 September 2018

Assembly reconciliation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

Comparative genome assembly.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4545859

MetaTISA: Metagenomic Translation Initiation Site Annotator for improving gene start prediction

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26250558

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-015-0686-X

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

DBLP publication ID

journals/bmcbi/LaiWWDZ15

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

26250558

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26250558%20AND%20SRC:MED&resulttype=core&format=json