Evolutionary and Functional Analysis of Old World Primate TRIM5 Reveals the Ancient Emergence of Primate Lentiviruses and Convergent Evolution Targeting a Conserved Capsid Interface (Q35751229)

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scientific article published on 20 August 2015

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English	Evolutionary and Functional Analysis of Old World Primate TRIM5 Reveals the Ancient Emergence of Primate Lentiviruses and Convergent Evolution Targeting a Conserved Capsid Interface	scientific article published on 20 August 2015

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scholarly article

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22 February 2020

Evolutionary and Functional Analysis of Old World Primate TRIM5 Reveals the Ancient Emergence of Primate Lentiviruses and Convergent Evolution Targeting a Conserved Capsid Interface (English)

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22 February 2020

convergent evolution

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Andrea Kirmaier

2

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22 February 2020

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Kevin R McCarthy

1

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22 February 2020

Patrick Autissier

3

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Welkin E Johnson

4

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20 August 2015

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e1005085

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Creative Commons Attribution 4.0 International

20 August 2015

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Structural basis of HIV-1 capsid recognition by PF74 and CPSF6.

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Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly.

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Endogenous lentivirus in Malayan colugo (Galeopterus variegatus), a close relative of primates

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Structural studies of postentry restriction factors reveal antiparallel dimers that enable avid binding to the HIV-1 capsid lattice

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Pathogenic features associated with increased virulence upon Simian immunodeficiency virus cross-species transmission from natural hosts

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A cyclophilin homology domain-independent role for Nup358 in HIV-1 infection

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The tripartite motif coiled-coil is an elongated antiparallel hairpin dimer

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Binding of the rhesus TRIM5α PRYSPRY domain to capsid is necessary but not sufficient for HIV-1 restriction

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Nucleoporin NUP153 phenylalanine-glycine motifs engage a common binding pocket within the HIV-1 capsid protein to mediate lentiviral infectivity

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APOBEC3G polymorphism as a selective barrier to cross-species transmission and emergence of pathogenic SIV and AIDS in a primate host

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Heterogeneous susceptibility of circulating SIV isolate capsids to HIV-interacting factors

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Evolutionary toggling of Vpx/Vpr specificity results in divergent recognition of the restriction factor SAMHD1.

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Gain-of-Sensitivity Mutations in a Trim5-Resistant Primary Isolate of Pathogenic SIV Identify Two Independent Conserved Determinants of Trim5α Specificity

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A comparison of murine leukemia viruses that escape from human and rhesus macaque TRIM5αs

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Convergence and divergence in the evolution of the APOBEC3G-Vif interaction reveal ancient origins of simian immunodeficiency viruses

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Birth, decay, and reconstruction of an ancient TRIMCyp gene fusion in primate genomes

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High efficiency gene transfer to airways of mice using influenza hemagglutinin pseudotyped lentiviral vectors

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Structural insight into HIV-1 capsid recognition by rhesus TRIM5

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12 July 2018

CPSF6 Defines a Conserved Capsid Interface that Modulates HIV-1 Replication

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12 July 2018

Structure of the rhesus monkey TRIM5 PRYSPRY domain, the HIV capsid recognition module

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FastML: a web server for probabilistic reconstruction of ancestral sequences

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Endogenous lentiviral elements in the weasel family (Mustelidae)

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12 July 2018

Evolutionary and functional analyses of the interaction between the myeloid restriction factor SAMHD1 and the lentiviral Vpx protein

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Endogenous lentiviruses in the ferret genome

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Viral evolution in deep time: lentiviruses and mammals

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HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency

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12 July 2018

Paleovirology - ghosts and gifts of viruses past

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Two-stepping through time: mammals and viruses

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12 July 2018

Novel Escape Mutants Suggest an Extensive TRIM5α Binding Site Spanning the Entire Outer Surface of the Murine Leukemia Virus Capsid Protein

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12 July 2018

A molecular phylogeny of living primates

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12 July 2018

Unique spectrum of activity of prosimian TRIM5alpha against exogenous and endogenous retroviruses

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Impact of simian immunodeficiency virus infection on chimpanzee population dynamics

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Island biogeography reveals the deep history of SIV

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12 July 2018

TRIM5 suppresses cross-species transmission of a primate immunodeficiency virus and selects for emergence of resistant variants in the new species

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

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12 July 2018

Ancient adaptive evolution of tetherin shaped the functions of Vpu and Nef in human immunodeficiency virus and primate lentiviruses.

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Generation of human TRIM5alpha mutants with high HIV-1 restriction activity

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Paleovirology--modern consequences of ancient viruses

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Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz

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NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus

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Parallel Germline Infiltration of a Lentivirus in Two Malagasy Lemurs

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Molecular evolution of the antiretroviral TRIM5 gene.

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12 July 2018

An invariant surface patch on the TRIM5alpha PRYSPRY domain is required for retroviral restriction but dispensable for capsid binding

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A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution

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Structure of the capsid amino-terminal domain from the betaretrovirus, Jaagsiekte sheep retrovirus

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12 July 2018

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12 July 2018

Rhesus macaque TRIM5 alleles have divergent antiretroviral specificities

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12 July 2018

Primate lentivirus capsid sensitivity to TRIM5 proteins

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12 July 2018

Evolution of a TRIM5-CypA splice isoform in old world monkeys

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12 July 2018

Independent evolution of an antiviral TRIMCyp in rhesus macaques

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12 July 2018

Independent genesis of chimeric TRIM5-cyclophilin proteins in two primate species

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12 July 2018

TRIMCyp expression in Old World primates Macaca nemestrina and Macaca fascicularis

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12 July 2018

Antiretroviral activity of ancestral TRIM5alpha.

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12 July 2018

Comparative requirements for the restriction of retrovirus infection by TRIM5alpha and TRIMCyp

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12 July 2018

Durable, safe, multi-gene lentiviral vector expression in feline trabecular meshwork

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The delayed rise of present-day mammals

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12 July 2018

Balancing selection and the evolution of functional polymorphism in Old World monkey TRIM5alpha

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12 July 2018

All three variable regions of the TRIM5alpha B30.2 domain can contribute to the specificity of retrovirus restriction

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12 July 2018

Effects of human TRIM5alpha polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection

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12 July 2018

Two surface-exposed elements of the B30.2/SPRY domain as potency determinants of N-tropic murine leukemia virus restriction by human TRIM5alpha

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12 July 2018

Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5alpha restriction factor

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12 July 2018

Influenza M2 envelope protein augments avian influenza hemagglutinin pseudotyping of lentiviral vectors

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12 July 2018

Differential restriction of human immunodeficiency virus type 2 and simian immunodeficiency virus SIVmac by TRIM5alpha alleles

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12 July 2018

Human tripartite motif 5alpha domains responsible for retrovirus restriction activity and specificity

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12 July 2018

A specific region of 37 amino acid residues in the SPRY (B30.2) domain of African green monkey TRIM5alpha determines species-specific restriction of simian immunodeficiency virus SIVmac infection

1 reference

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12 July 2018

TRIM5alpha selectively binds a restriction-sensitive retroviral capsid

1 reference

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12 July 2018

The B30.2(SPRY) domain of the retroviral restriction factor TRIM5alpha exhibits lineage-specific length and sequence variation in primates

1 reference

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12 July 2018

Retrovirus restriction by TRIM5alpha variants from Old World and New World primates

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12 July 2018

Species-specific variation in the B30.2(SPRY) domain of TRIM5alpha determines the potency of human immunodeficiency virus restriction

1 reference

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12 July 2018

Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain

1 reference

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12 July 2018

A single amino acid change in the SPRY domain of human Trim5alpha leads to HIV-1 restriction

1 reference

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12 July 2018

High-resolution structure of a retroviral capsid hexameric amino-terminal domain

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12 July 2018

Trim5alpha protein restricts both HIV-1 and murine leukemia virus

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12 July 2018

The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys

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12 July 2018

The history of SIVS and AIDS: epidemiology, phylogeny and biology of isolates from naturally SIV infected non-human primates (NHP) in Africa

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12 July 2018

Novel single-cell-level phenotypic assay for residual drug susceptibility and reduced replication capacity of drug-resistant human immunodeficiency virus type 1.

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12 July 2018

Human and simian immunodeficiency virus capsid proteins are major viral determinants of early, postentry replication blocks in simian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Restriction of lentivirus in monkeys

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Structure of the N-terminal 283-residue fragment of the immature HIV-1 Gag polyprotein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

The tripartite motif family identifies cell compartments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Structural analysis of the N-terminal domain of the human T-cell leukemia virus capsid protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Structure and self-association of the Rous sarcoma virus capsid protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

A fast algorithm for joint reconstruction of ancestral amino acid sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Human immunodeficiency virus replication in a primary effusion lymphoma cell line stimulates lytic-phase replication of Kaposi's sarcoma-associated herpesvirus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Production and design of more effective avian replication-incompetent retroviral vectors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Novel topology of a zinc-binding domain from a protein involved in regulating early Xenopus development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Specific incorporation of cyclophilin A into HIV-1 virions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Isolation of T-cell tropic HTLV-III-like retrovirus from macaques

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

12 July 2018

Ancient origin of a deletion in human BST2/Tetherin that confers protection against viral zoonoses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

25 September 2018

Impact of novel TRIM5alpha variants, Gly110Arg and G176del, on the anti-HIV-1 activity and the susceptibility to HIV-1 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

25 September 2018

Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

25 September 2018

A novel fusion gene, TRIM5-Cyclophilin A in the pig-tailed macaque determines its susceptibility to HIV-1 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

25 September 2018

A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4546234

25 September 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/26291613

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PPAT.1005085

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26291613%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26291613%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26291613%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

ResearchGate publication ID

0 references

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