RNA structure. Structure of the HIV-1 RNA packaging signal (Q35820838)

10 August 2017

RNA structure. Structure of the HIV-1 RNA packaging signal (English)

1 reference

10 August 2017

Sarah C Keane

1

1 reference

10 August 2017

Xiao Heng

2

1 reference

10 August 2017

Kun Lu

3

1 reference

10 August 2017

Siarhei Kharytonchyk

4

1 reference

10 August 2017

Venkateswaran Ramakrishnan

5

1 reference

10 August 2017

Gregory Carter

6

1 reference

10 August 2017

Shawn Barton

7

1 reference

10 August 2017

Azra Hosic

8

1 reference

10 August 2017

Alyssa Florwick

9

1 reference

10 August 2017

Justin Santos

10

1 reference

10 August 2017

Nicholas C Bolden

11

1 reference

10 August 2017

Sayo McCowin

12

1 reference

10 August 2017

David A Case

13

1 reference

10 August 2017

Bruce A Johnson

14

1 reference

10 August 2017

Marco Salemi

15

1 reference

10 August 2017

Alice Telesnitsky

16

1 reference

10 August 2017

Michael F Summers

17

1 reference

10 August 2017

language of work or name

English

0 references

publication date

1 May 2015

1 reference

10 August 2017

5

1 reference

based on heuristic

inferred from page(s)

published in

Science

1 reference

10 August 2017

348

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10 August 2017

6237

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10 August 2017

917-921

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Global changes in the RNA binding specificity of HIV-1 gag regulate virion genesis

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Life of psi: how full-length HIV-1 RNAs become packaged genomes in the viral particles

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

In-gel probing of individual RNA conformers within a mixed population reveals a dimerization structural switch in the HIV-1 leader

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Dimeric RNA recognition regulates HIV-1 genome packaging

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

The A-nucleotide preference of HIV-1 in the context of its structured RNA genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Isotope labeling and segmental labeling of larger RNAs for NMR structural studies

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Structural investigation of HIV-1 genomic RNA dimerization process reveals a role for the Major Splice-site Donor stem loop.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Identification of a minimal region of the HIV-1 5'-leader required for RNA dimerization, NC binding, and packaging

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Structural determinants and mechanism of HIV-1 genome packaging

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Visualizing HIV-1 assembly

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Isotope labeling strategies for NMR studies of RNA

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

High efficiency of HIV-1 genomic RNA packaging and heterozygote formation revealed by single virion analysis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

The secondary structure of the human immunodeficiency virus type 1 transcript modulates viral splicing and infectivity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

RNA structure modulates splicing efficiency at the human immunodeficiency virus type 1 major splice donor

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Effects of mutations in the human immunodeficiency virus type 1 Gag gene on RNA packaging and recombination

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Dimerization of retroviral RNA genomes: an inseparable pair.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Human immunodeficiency virus type 1 preferentially encapsidates genomic RNAs that encode Pr55(Gag): functional linkage between translation and RNA packaging

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Zinc- and sequence-dependent binding to nucleic acids by the N-terminal zinc finger of the HIV-1 nucleocapsid protein: NMR structure of the complex with the Psi-site analog, dACGCC.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Cloning and functional analysis of multiply spliced mRNA species of human immunodeficiency virus type 1

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Use of very long-distance NOEs in a fully deuterated protein: an approach for rapid protein fold determination.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4492308

The retroviral RNA dimer linkage: different structures may reflect different roles

24 September 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

Database proton NMR chemical shifts for RNA signal assignment and validation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

NMR View: A computer program for the visualization and analysis of NMR data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

Observation of H-bond mediated 3hJH2H3 coupling constants across Watson-Crick AU base pairs in RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H–13C residual dipolar coupling on refinement

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

The Amber biomolecular simulation programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

Mfold web server for nucleic acid folding and hybridization prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

RNAstructure: software for RNA secondary structure prediction and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

PAMLX: a graphical user interface for PAML.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

MolProbity: all-atom structure validation for macromolecular crystallography

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA9266

The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25999508

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.AAA9266

1 reference

10 August 2017

1 reference

10 August 2017

1 reference