Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation. (Q35850333)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

1 reference

3

1 reference

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16 February 2020

Rajat Gupta

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Dessislava Malinova

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Chiara Francavilla

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Gail A Bishop

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

author name string

Shankha Satpathy

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Sebastian A Wagner

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Trine A Kristiansen

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Pavel Tolar

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Bruce S Hostager

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Chunaram Choudhary

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

publication date

2 June 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

Molecular Systems Biology

16 February 2020

published in

1 reference

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16 February 2020

volume

11

1 reference

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16 February 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

page(s)

810

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

16 February 2020

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Convergence of ubiquitylation and phosphorylation signaling in rapamycin-treated yeast cells

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Targeting the B-cell receptor signaling pathway in B lymphoid malignancies

11 July 2018

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11 July 2018

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Essential role of the linear ubiquitin chain assembly complex in lymphoma revealed by rare germline polymorphisms

11 July 2018

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DUB-resistant ubiquitin to survey ubiquitination switches in mammalian cells

11 July 2018

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Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chains

11 July 2018

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MEF2B mutations lead to deregulated expression of the oncogene BCL6 in diffuse large B cell lymphoma

11 July 2018

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Lysine succinylation is a frequently occurring modification in prokaryotes and eukaryotes and extensively overlaps with acetylation

11 July 2018

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New insights into pre-BCR and BCR signalling with relevance to B cell malignancies

11 July 2018

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OTU deubiquitinases reveal mechanisms of linkage specificity and enable ubiquitin chain restriction analysis

11 July 2018

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OTULIN restricts Met1-linked ubiquitination to control innate immune signaling

11 July 2018

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Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing

11 July 2018

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B cells use mechanical energy to discriminate antigen affinities

11 July 2018

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Targeting pathological B cell receptor signalling in lymphoid malignancies

11 July 2018

1 reference

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Robust phosphoproteome enrichment using monodisperse microsphere-based immobilized titanium (IV) ion affinity chromatography

11 July 2018

1 reference

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The NF-κB signaling protein Bcl10 regulates actin dynamics by controlling AP1 and OCRL-bearing vesicles

11 July 2018

1 reference

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Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass

11 July 2018

1 reference

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Analysis of nuclear factor-κB (NF-κB) essential modulator (NEMO) binding to linear and lysine-linked ubiquitin chains and its role in the activation of NF-κB.

11 July 2018

1 reference

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Mass spectrometry-based proteomics and network biology

11 July 2018

1 reference

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Signaling-mediated control of ubiquitin ligases in endocytosis.

11 July 2018

1 reference

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Murine models of B-cell lymphomas: promising tools for designing cancer therapies

11 July 2018

1 reference

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The Ankrd 13 family of UIM-bearing proteins regulates EGF receptor endocytosis from the plasma membrane

11 July 2018

1 reference

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Systematic and quantitative assessment of the ubiquitin-modified proteome

11 July 2018

1 reference

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Impaired B cell development and function in the absence of IkappaBNS

11 July 2018

1 reference

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A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles

11 July 2018

1 reference

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The ubiquitin ligase Peli1 negatively regulates T cell activation and prevents autoimmunity

11 July 2018

1 reference

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HOIL-1L interacting protein (HOIP) is essential for CD40 signaling

11 July 2018

1 reference

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Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma

11 July 2018

1 reference

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Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia

11 July 2018

1 reference

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Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

11 July 2018

1 reference

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GProX, a user-friendly platform for bioinformatics analysis and visualization of quantitative proteomics data

11 July 2018

1 reference

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Ubiquitination of K-Ras enhances activation and facilitates binding to select downstream effectors.

11 July 2018

1 reference

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Andromeda: a peptide search engine integrated into the MaxQuant environment

11 July 2018

1 reference

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ZAPS is a potent stimulator of signaling mediated by the RNA helicase RIG-I during antiviral responses

11 July 2018

1 reference

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Antigen receptor signaling to NF-kappaB via CARMA1, BCL10, and MALT1.

11 July 2018

1 reference

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Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling

11 July 2018

1 reference

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Oncogenic activation of NF-kappaB.

11 July 2018

1 reference

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Decoding signalling networks by mass spectrometry-based proteomics

11 July 2018

1 reference

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NetPath: a public resource of curated signal transduction pathways

11 July 2018

1 reference

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Disease mutations in Rab7 result in unregulated nucleotide exchange and inappropriate activation

11 July 2018

1 reference

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Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

A20 negatively regulates T cell receptor signaling to NF-kappaB by cleaving Malt1 ubiquitin chains.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Rab7: roles in membrane trafficking and disease

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Universal sample preparation method for proteome analysis

11 July 2018

1 reference

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Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Nonproteolytic functions of ubiquitin in cell signaling

11 July 2018

1 reference

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Structural Basis for Recognition of Diubiquitins by NEMO

11 July 2018

1 reference

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

11 July 2018

1 reference

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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

11 July 2018

1 reference

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Integrating and annotating the interactome using the MiMI plugin for cytoscape

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Transcription factor Mef2c is required for B cell proliferation and survival after antigen receptor stimulation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

NEMO recognition of ubiquitinated Bcl10 is required for T cell receptor-mediated NF-kappaB activation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Multiple ITAM-coupled NK-cell receptors engage the Bcl10/Malt1 complex via Carma1 for NF-kappaB and MAPK activation to selectively control cytokine production.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Characterization of Cullin-box sequences that direct recruitment of Cul2-Rbx1 and Cul5-Rbx2 modules to Elongin BC-based ubiquitin ligases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Integration of biological networks and gene expression data using Cytoscape

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

A novel mechanism for TNFR-associated factor 6-dependent CD40 signaling

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Higher-energy C-trap dissociation for peptide modification analysis.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Germline loss-of-function mutations in SPRED1 cause a neurofibromatosis 1-like phenotype

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Spreds are essential for embryonic lymphangiogenesis by regulating vascular endothelial growth factor receptor 3 signaling

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

The BTB-kelch protein KLHL6 is involved in B-lymphocyte antigen receptor signaling and germinal center formation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

The TRAF6 ubiquitin ligase and TAK1 kinase mediate IKK activation by BCL10 and MALT1 in T lymphocytes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

B cell receptor signaling and autoimmunity.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Spred is a Sprouty-related suppressor of Ras signalling

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Rab-interacting lysosomal protein (RILP): the Rab7 effector required for transport to lysosomes.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Phosphoprotein associated with glycosphingolipid-enriched microdomains (PAG), a novel ubiquitously expressed transmembrane adaptor protein, binds the protein tyrosine kinase csk and is involved in regulation of T cell activation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Rab7: a key to lysosome biogenesis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Characterization of NEDD8, a developmentally down-regulated ubiquitin-like protein

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

The pCL vector system: rapid production of helper-free, high-titer, recombinant retroviruses

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Major histocompatibility complex-restricted antigen presentation to antigen-reactive T cells by B lymphocyte tumor cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Establishment and characterization of BALB/c lymphoma lines with B cell properties

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Linear ubiquitin chains: NF-κB signalling, cell death and beyond.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Defective immune responses in mice lacking LUBAC-mediated linear ubiquitination in B cells.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Firefly luciferase mutants as sensors of proteome stress

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Phosphorylation of Bcl10 negatively regulates T-cell receptor-mediated NF-kappaB activation

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Essential role for IkappaB kinase beta in remodeling Carma1-Bcl10-Malt1 complexes upon T cell activation.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Differential modification of Ras proteins by ubiquitination

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

The strength of receptor signaling is centrally controlled through a cooperative loop between Ca2+ and an oxidant signal.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

B cell developmental requirement for the G alpha i2 gene

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

A distinct signaling pathway used by the IgG-containing B cell antigen receptor

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Burst-enhancing role of the IgG membrane tail as a molecular determinant of memory.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501846

Engagement of the B-cell antigen receptor activates STAT through Lyn in a Jak-independent pathway

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26038114

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.15252/MSB.20145880

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

PubMed publication ID

26038114

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26038114%20AND%20SRC:MED&resulttype=core&format=json