Long non-coding RNAs are major contributors to transcriptome changes in sunflower meiocytes with different recombination rates (Q36073325)

12 August 2017

Long non-coding RNAs are major contributors to transcriptome changes in sunflower meiocytes with different recombination rates (English)

1 reference

12 August 2017

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Nathalia M V Flórez-Zapata

series ordinal

1

1 reference

12 August 2017

M Humberto Reyes-Valdés

series ordinal

2

1 reference

12 August 2017

Octavio Martínez

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3

1 reference

12 August 2017

language of work or name

English

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publication date

11 July 2016

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12 August 2017

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12 August 2017

17

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12 August 2017

490

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describes a project that uses

12 August 2017

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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2 October 2017

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Emerging Roles for Non-Coding RNAs in Male Reproductive Development in Flowering Plants

2 October 2017

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Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa.

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2 October 2017

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Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs.

2 October 2017

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A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

2 October 2017

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Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.).

2 October 2017

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Long non-coding RNAs: a novel endogenous source for the generation of Dicer-like 1-dependent small RNAs in Arabidopsis thaliana

2 October 2017

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The noncoding RNA revolution-trashing old rules to forge new ones

2 October 2017

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Genome-wide discovery and characterization of maize long non-coding RNAs.

2 October 2017

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The evolution of lncRNA repertoires and expression patterns in tetrapods

2 October 2017

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The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads

2 October 2017

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Long non-coding genes implicated in response to stripe rust pathogen stress in wheat (Triticum aestivum L.).

2 October 2017

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Kraken: a set of tools for quality control and analysis of high-throughput sequence data

2 October 2017

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2 October 2017

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Comparative expression profiling of miRNA during anther development in genetic male sterile and wild type cotton

2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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Posttranscriptional gene regulation by long noncoding RNA

2 October 2017

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2 October 2017

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Characterization of a set of novel meiotically-active promoters in Arabidopsis.

2 October 2017

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2 October 2017

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Genome regulation by long noncoding RNAs.

2 October 2017

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2 October 2017

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A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

2 October 2017

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BRCA2 is a mediator of RAD51- and DMC1-facilitated homologous recombination in Arabidopsis thaliana.

2 October 2017

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PlantNATsDB: a comprehensive database of plant natural antisense transcripts

2 October 2017

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Global transcriptome analysis of two ameiotic1 alleles in maize anthers: defining steps in meiotic entry and progression through prophase I

2 October 2017

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

2 October 2017

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Pathways to meiotic recombination in Arabidopsis thaliana

2 October 2017

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MicroRNA activity in the Arabidopsis male germline.

2 October 2017

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Quality control and preprocessing of metagenomic datasets

2 October 2017

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The transcriptome landscape of Arabidopsis male meiocytes from high-throughput sequencing: the complexity and evolution of the meiotic process

2 October 2017

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Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes

2 October 2017

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Small RNA diversity in plants and its impact in development

2 October 2017

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Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis

2 October 2017

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Control of female gamete formation by a small RNA pathway in Arabidopsis

2 October 2017

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

2 October 2017

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

2 October 2017

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RNA-mediated chromatin-based silencing in plants

2 October 2017

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Maize AMEIOTIC1 is essential for multiple early meiotic processes and likely required for the initiation of meiosis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

Defining diversity, specialization, and gene specificity in transcriptomes through information theory

2 October 2017

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2 October 2017

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Zm401, a short-open reading-frame mRNA or noncoding RNA, is essential for tapetum and microspore development and can regulate the floret formation in maize

2 October 2017

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The Eukaryotic Genome as an RNA Machine

2 October 2017

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Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide

2 October 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

Transposable elements and the epigenetic regulation of the genome

2 October 2017

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Genetics of meiotic prophase I in plants

2 October 2017

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Post-transcriptional small RNA pathways in plants: mechanisms and regulations

2 October 2017

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Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

2 October 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

The evolution of recombination under domestication: a test of two hypotheses.

2 October 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

Statistical significance for genomewide studies

2 October 2017

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The core meiotic transcriptome in budding yeasts

2 October 2017

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Repbase update: a database and an electronic journal of repetitive elements

2 October 2017

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Transcriptional regulation of meiosis in yeast

2 October 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

2 October 2017

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Genome-wide identification of long intergenic noncoding RNA genes and their potential association with domestication in pigs.

2 October 2017

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Streaming fragment assignment for real-time analysis of sequencing experiments

11 July 2018

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Expression and diversification analysis reveals transposable elements play important roles in the origin of Lycopersicon-specific lncRNAs in tomato

11 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

LncTar: a tool for predicting the RNA targets of long noncoding RNAs.

23 September 2018

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Comparative transcriptomics of early meiosis in Arabidopsis and maize

23 September 2018

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Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

Cellular source and mechanisms of high transcriptome complexity in the mammalian testis

23 September 2018

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The dynamics of histone H3 modifications is species-specific in plant meiosis.

23 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

Meiosis-specific noncoding RNA mediates robust pairing of homologous chromosomes in meiosis.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

Small RNAs in angiosperms: sequence characteristics, distribution and generation

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

The Arabidopsis MALE MEIOCYTE DEATH1 gene encodes a PHD-finger protein that is required for male meiosis

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

Isolation and characterization of a novel GRAS gene that regulates meiosis-associated gene expression

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

The transcriptional program of meiosis and sporulation in fission yeast.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

Meiotic chromosome pairing in maize is associated with a novel chromatin organization

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940957

23 September 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-2776-1

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-016-2776-1

10.1186/S12864-016-2776-1

21 January 2018

Identifiers

DOI

1 reference

12 August 2017

1 reference

12 August 2017

PubMed publication ID

27401977

1 reference