SC3: consensus clustering of single-cell RNA-seq data (Q36323703)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

SC3: consensus clustering of single-cell RNA-seq data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

0 references

1 reference

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Vladimir Y Kiselev

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Kristina Kirschner

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Michael T. Schaub

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Tallulah Andrews

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Kedar N Natarajan

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Anthony R Green

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

11

Martin Hemberg

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

author name string

Andrew Yiu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Tamir Chandra

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Wolf Reik

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

language of work or name

English

0 references

publication date

27 March 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

page(s)

483-486

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

14 March 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/5410170

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nmeth.4236

0 references

cites work

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

GiniClust: detecting rare cell types from single-cell gene expression data with Gini index

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

g:Profiler-a web server for functional interpretation of gene lists (2016 update)

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

pcaReduce: hierarchical clustering of single cell transcriptional profiles

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Single-cell messenger RNA sequencing reveals rare intestinal cell types

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Identification of cell types from single-cell transcriptomes using a novel clustering method.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Effect of mutation order on myeloproliferative neoplasms

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

limma powers differential expression analyses for RNA-sequencing and microarray studies

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Normalization of RNA-seq data using factor analysis of control genes or samples

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Trimmomatic: a flexible trimmer for Illumina sequence data

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Full-length RNA-seq from single cells using Smart-seq2.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Somatic CALR mutations in myeloproliferative neoplasms with nonmutated JAK2

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Janus kinase deregulation in leukemia and lymphoma

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

TopHat: discovering splice junctions with RNA-Seq

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Population structure and eigenanalysis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Bioconductor: open software development for computational biology and bioinformatics

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Differential cytokine effects on primitive (CD34+CD38-) human hematopoietic cells: novel responses to Flt3-ligand and thrombopoietin

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5410170

Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing

29 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos.

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Single-cell RNA sequencing identifies extracellular matrix gene expression by pancreatic circulating tumor cells

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Level-spacing distributions and the Airy kernel

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Silhouettes: A graphical aid to the interpretation and validation of cluster analysis

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

ROBPCA: A New Approach to Robust Principal Component Analysis

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4236

7 January 2021

Identifiers

DOI

10.1038/NMETH.4236

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28346451%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference