The epigenomic landscape of African rainforest hunter-gatherers and farmers (Q36360668)

13 August 2017

The epigenomic landscape of African rainforest hunter-gatherers and farmers (English)

1 reference

13 August 2017

0 references

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1 reference

20

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13 August 2017

13

Antoine Gessain

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Evelyne Heyer

12

Evelyne Heyer

1 reference

13 August 2017

Timothée Flutre

5

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Lisa M McEwen

Lisa M McEwen

10

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Maud Fagny

Maud Fagny

1

0 references

Maxime Rotival

Maxime Rotival

4

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Meaghan J Jones

Meaghan J Jones

6

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Etienne Patin

Etienne Patin

2

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Luis B Barreiro

Luis B Barreiro

18

0 references

Michael Kobor

Michael S Kobor

19

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Patrick Mouguiama-Daouda

15

Patrick Mouguiama-Daouda

1 reference

13 August 2017

7

Katherine J Siddle

1 reference

13 August 2017

8

Hélène Quach

1 reference

13 August 2017

9

Christine Harmant

1 reference

13 August 2017

14

Edouard Betsem

1 reference

13 August 2017

Julia L MacIsaac

3

1 reference

13 August 2017

Alain Froment

11

1 reference

13 August 2017

Jean-Marie Hombert

16

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13 August 2017

George H Perry

17

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13 August 2017

language of work or name

English

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publication date

30 November 2015

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13 August 2017

Nature Communications

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13 August 2017

6

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13 August 2017

10047

1 reference

Creative Commons Attribution 4.0 International

13 August 2017

start time

30 November 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4674682

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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The genetic and mechanistic basis for variation in gene regulation

30 September 2017

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30 September 2017

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Defining the role of common variation in the genomic and biological architecture of adult human height

30 September 2017

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Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels

30 September 2017

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Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche

30 September 2017

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Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers.

30 September 2017

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Genome-wide diet-gene interaction analyses for risk of colorectal cancer

30 September 2017

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Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility

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Accounting for cellular heterogeneity is critical in epigenome-wide association studies

30 September 2017

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Charting a dynamic DNA methylation landscape of the human genome

30 September 2017

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DNA methylation contributes to natural human variation

30 September 2017

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Climatic and cultural changes in the west Congo Basin forests over the past 5000 years

30 September 2017

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Genome-wide variation of cytosine modifications between European and African populations and the implications for complex traits

30 September 2017

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Passive and active DNA methylation and the interplay with genetic variation in gene regulation

30 September 2017

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A statistical framework for joint eQTL analysis in multiple tissues

30 September 2017

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Complex patterns of genomic admixture within southern Africa

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array

30 September 2017

1 reference

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An integrated map of genetic variation from 1,092 human genomes

30 September 2017

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The genetic prehistory of southern Africa

30 September 2017

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Factors underlying variable DNA methylation in a human community cohort

30 September 2017

1 reference

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Genomic variation in seven Khoe-San groups reveals adaptation and complex African history

30 September 2017

1 reference

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An integrated encyclopedia of DNA elements in the human genome

30 September 2017

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Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips

30 September 2017

1 reference

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Patterns of ancestry, signatures of natural selection, and genetic association with stature in Western African pygmies

30 September 2017

1 reference

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DNA methylation arrays as surrogate measures of cell mixture distribution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Adaptive evolution of loci covarying with the human African Pygmy phenotype

30 September 2017

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Population-specificity of human DNA methylation

30 September 2017

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The sva package for removing batch effects and other unwanted variation in high-throughput experiments

30 September 2017

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Epigenetics and the environment: emerging patterns and implications

30 September 2017

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A linear complexity phasing method for thousands of genomes

30 September 2017

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Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

An early divergence of KhoeSan ancestors from those of other modern humans is supported by an ABC-based analysis of autosomal resequencing data

30 September 2017

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

30 September 2017

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Hunter-gatherer genomic diversity suggests a southern African origin for modern humans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Insights into the demographic history of African Pygmies from complete mitochondrial genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Robust relationship inference in genome-wide association studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

CISH and susceptibility to infectious diseases

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Genetic control of individual differences in gene-specific methylation in human brain.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Complete Khoisan and Bantu genomes from southern Africa

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Genome-wide patterns of population structure and admixture in West Africans and African Americans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Distribution and manifestations of inflammatory bowel disease in Asians, Hispanics, and African Americans: a systematic review

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Inferring the demographic history of African farmers and pygmy hunter-gatherers using a multilocus resequencing data set

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Evolution of the human pygmy phenotype

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

DNA methylation profiles in monozygotic and dizygotic twins.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Rapid DNA methylation changes after exposure to traffic particles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

A genome-wide gene expression signature of environmental geography in leukocytes of Moroccan Amazighs.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

PLINK: a tool set for whole-genome association and population-based linkage analyses

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

A map of recent positive selection in the human genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Gene ontology: tool for the unification of biology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

The genomic distribution of population substructure in four populations using 8,525 autosomal SNPs.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Detecting differential gene expression with a semiparametric hierarchical mixture method

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674682

Changes in DNA Methylation Patterns in Subjects Exposed to Low-Dose Benzene

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS10047

Allergic disease in urban and rural populations: increasing prevalence with increasing urbanization

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS10047

21 January 2018

Identifiers

DOI

10.1038/NCOMMS10047

1 reference

13 August 2017

0 references

1 reference

13 August 2017

PubMed publication ID

26616214

1 reference