Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. (Q36659158)

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1 February 2020

title

Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome (English)

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4

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Liang Zhang

5

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1 February 2020

author name string

Miao Yu

1

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1 February 2020

Gary C Hon

2

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1 February 2020

Keith E Szulwach

3

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1 February 2020

Audrey Kim

6

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1 February 2020

Xuekun Li

7

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1 February 2020

Qing Dai

8

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1 February 2020

Yin Shen

9

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1 February 2020

Beomseok Park

10

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1 February 2020

Jung-Hyun Min

11

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1 February 2020

Peng Jin

12

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1 February 2020

Bing Ren

13

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1 February 2020

Chuan He

14

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language of work or name

English

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publication date

17 May 2012

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1 February 2020

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1 February 2020

volume

149

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1 February 2020

issue

6

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1 February 2020

page(s)

1368-1380

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Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation

1 February 2020

cites work

1 reference

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Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA

30 September 2017

1 reference

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Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells

30 September 2017

1 reference

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In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions

30 September 2017

1 reference

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5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging

30 September 2017

1 reference

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The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes

30 September 2017

1 reference

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Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites

30 September 2017

1 reference

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Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA

30 September 2017

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Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development

30 September 2017

1 reference

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Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine

30 September 2017

1 reference

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Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain

30 September 2017

1 reference

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Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells

30 September 2017

1 reference

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Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair

30 September 2017

1 reference

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The discovery of 5-formylcytosine in embryonic stem cell DNA.

30 September 2017

1 reference

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5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589129

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589129

Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain

30 September 2017

1 reference

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TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

30 September 2017

1 reference

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Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589129

Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells.

30 September 2017

1 reference

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DNA methylation and demethylation in mammals

30 September 2017

1 reference

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5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming

30 September 2017

1 reference

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Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine

30 September 2017

1 reference

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Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells

30 September 2017

1 reference

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

30 September 2017

1 reference

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Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates

30 September 2017

1 reference

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Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

30 September 2017

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Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2

30 September 2017

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30 September 2017

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Epigenetic modifications in pluripotent and differentiated cells

30 September 2017

1 reference

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Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA

30 September 2017

1 reference

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Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

30 September 2017

1 reference

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Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

30 September 2017

1 reference

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Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine

30 September 2017

1 reference

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The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing

30 September 2017

1 reference

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Human DNA methylomes at base resolution show widespread epigenomic differences

30 September 2017

1 reference

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The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

30 September 2017

1 reference

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Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

30 September 2017

1 reference

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

30 September 2017

1 reference

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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

30 September 2017

1 reference

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30 September 2017

The mammalian epigenome

1 reference

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EUKARYOTIC CYTOSINE METHYLTRANSFERASES

30 September 2017

1 reference

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Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2).

30 September 2017

1 reference

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Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589129

High sensitivity mapping of methylated cytosines

30 September 2017

1 reference

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The somatic replication of DNA methylation

30 September 2017

1 reference

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Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos

30 September 2017

1 reference

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A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA.

28 June 2018

1 reference

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Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589129

DNA-binding factors shape the mouse methylome at distal regulatory regions

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589129

Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589129

Quantification of the sixth DNA base hydroxymethylcytosine in the brain

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589129

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3589129

The Dinucleotide CG as a Genomic Signalling Module

20 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22608086

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2012.04.027

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22608086%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22608086%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

PubMed publication ID

22608086

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22608086%20AND%20SRC:MED&resulttype=core&format=json