Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome. (Q36672431)

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scientific article published on January 2007

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English	Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.	scientific article published on January 2007

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scholarly article

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1 January 2020

Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome (English)

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Agnes Hotz-Wagenblatt

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Agnes Hotz-Wagenblatt

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Britta Mersch

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Gil Ast

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Nurit Gal-Mark

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Galit Lev-Maor

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1 January 2007

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R127

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https://scigraph.springernature.com/pub.10.1186/gb-2007-8-6-r127

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Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

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The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage

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RNA-editing-mediated exon evolution

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Modern origin of numerous alternatively spliced human introns from tandem arrays

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Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns

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Genomic splice-site analysis reveals frequent alternative splicing close to the dominant splice site.

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Long L1 insertions in human gene introns specifically reduce the content of corresponding primary transcripts

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Alu elements as regulators of gene expression

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Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons

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A distal enhancer and an ultraconserved exon are derived from a novel retroposon

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Do transposable elements really contribute to proteomes?

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Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression

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30 September 2017

Transcription factor YY1: structure, function, and therapeutic implications in cancer biology.

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The importance of being divisible by three in alternative splicing

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30 September 2017

Origin and evolution of new exons in rodents

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30 September 2017

From the margins of the genome: mobile elements shape primate evolution

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LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression?

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A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease

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Alu-SINE exonization: en route to protein-coding function

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The origin of recent introns: transposons?

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How did alternative splicing evolve?

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30 September 2017

Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes

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30 September 2017

Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons

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30 September 2017

Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation

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An unappreciated role for RNA surveillance

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30 September 2017

How prevalent is functional alternative splicing in the human genome?

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30 September 2017

YY1AP, a novel co-activator of YY1.

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Mobile elements and mammalian genome evolution.

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Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences

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Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain

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The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons

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30 September 2017

Initial sequencing and comparative analysis of the mouse genome

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Genome-wide detection of tissue-specific alternative splicing in the human transcriptome

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30 September 2017

Alu-containing exons are alternatively spliced

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30 September 2017

Alternative splicing of the adenylyl cyclase stimulatory G-protein G alpha(s) is regulated by SF2/ASF and heterogeneous nuclear ribonucleoprotein A1 (hnRNPA1) and involves the use of an unusual TG 3'-splice Site

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Initial sequencing and analysis of the human genome

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30 September 2017

A novel Alu-like element rearranged in the dystrophin gene causes a splicing mutation in a family with X-linked dilated cardiomyopathy.

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On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA"

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30 September 2017

Identification of splicing silencers and enhancers in sense Alus: a role for pseudoacceptors in splice site repression

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uAUG and uORFs in human and rodent 5'untranslated mRNAs

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28 June 2018

Phylogeny of phagotrophic euglenids (Euglenozoa) as inferred from hsp90 gene sequences.

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20 September 2018

Characterization of intron loss events in mammals

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20 September 2018

Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics

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20 September 2018

Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay

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20 September 2018

Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

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20 September 2018

Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer.

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KUB3 amplification and overexpression in human gliomas.

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20 September 2018

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10.1186/GB-2007-8-6-R127

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