Chromatin remodeling: insights and intrigue from single-molecule studies (Q36994145)

17 August 2017

1 reference

title

Chromatin remodeling: insights and intrigue from single-molecule studies (English)

1 reference

17 August 2017

Bradley R Cairns

1

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17 August 2017

1 November 2007

1 reference

Nature Structural & Molecular Biology

17 August 2017

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17 August 2017

14

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17 August 2017

11

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17 August 2017

989-996

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https://scigraph.springernature.com/pub.10.1038/nsmb1333

17 August 2017

0 references

cites work

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29 September 2017

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29 September 2017

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29 September 2017

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Effect of force on mononucleosomal dynamics

29 September 2017

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29 September 2017

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29 September 2017

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Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

29 September 2017

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29 September 2017

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Direct observation of DNA distortion by the RSC complex

29 September 2017

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RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP

29 September 2017

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Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

29 September 2017

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Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss

29 September 2017

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X-Ray Structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase Core and Its Complex with DNA

29 September 2017

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Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54

29 September 2017

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Chromatin remodeling by DNA bending, not twisting

29 September 2017

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Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II.

29 September 2017

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Functional role of extranucleosomal DNA and the entry site of the nucleosome in chromatin remodeling by ISW2.

29 September 2017

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Reaction cycle of the yeast Isw2 chromatin remodeling complex.

29 September 2017

1 reference

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Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Cellular machineries for chromosomal DNA repair.

29 September 2017

1 reference

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ISWI complexes in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Nucleosome remodeling: one mechanism, many phenomena?

29 September 2017

1 reference

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Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex

29 September 2017

1 reference

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Dynamic Properties of Nucleosomes during Thermal and ATP-Driven Mobilization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Colworth memorial lecture. Pathways for remodelling chromatin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

SWI/SNF unwraps, slides, and rewraps the nucleosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Structural analysis of the RSC chromatin-remodeling complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Chromatin remodeling by RSC involves ATP-dependent DNA translocation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Modularity and specialization in superfamily 1 and 2 helicases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Modulation of ISWI function by site-specific histone acetylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Generation of superhelical torsion by ATP-dependent chromatin remodeling activities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Critical role for the histone H4 N terminus in nucleosome remodeling by ISWI.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

25 years after the nucleosome model: chromatin modifications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Nucleosome mobilization catalysed by the yeast SWI/SNF complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Histone octamer transfer by a chromatin-remodeling complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Alteration of nucleosome structure as a mechanism of transcriptional regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Crystal structure of the nucleosome core particle at 2.8 A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Chromatin Structure: A Repeating Unit of Histones and DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Visualization of Rad54, a chromatin remodeling protein, translocating on single DNA molecules

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

The histone chaperone Asf1 increases the rate of histone eviction at the yeast PHO5 and PHO8 promoters.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Chromatin remodeling through directional DNA translocation from an internal nucleosomal site.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Removal of promoter nucleosomes by disassembly rather than sliding in vivo

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Backbone tracking by the SF2 helicase NPH-II.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Nucleosomes unfold completely at a transcriptionally active promoter.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Dynamics of ATP-dependent chromatin assembly by ACF.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

ISWI induces nucleosome sliding on nicked DNA.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Energetics and affinity of the histone octamer for defined DNA sequences

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: measurement of step size and translocation speed

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Activated RSC-nucleosome complex and persistently altered form of the nucleosome

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

Evidence for nucleosome depletion at active regulatory regions genome-wide

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788559

SWI/SNF chromatin remodeling requires changes in DNA topology

4 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB1333

Human ACF1 alters the remodeling strategy of SNF2h

31 March 2020

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB1333

Acetylated histone tail peptides induce structural rearrangements in the RSC chromatin remodeling complex

31 March 2020

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB1333

31 March 2020

Identifiers

DOI

10.1038/NSMB1333

1 reference

17 August 2017

1 reference

17 August 2017

1 reference

PMCID

2788559