Integrated analysis of the Plasmodium species transcriptome. (Q37008724)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27322479%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

Integrated analysis of the Plasmodium species transcriptome (English)

1 reference

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14 March 2020

0 references

4

1 reference

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14 March 2020

Guangan Hu

7

1 reference

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14 March 2020

Zbynek Bozdech

10

1 reference

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14 March 2020

author name string

Regina Hoo

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27322479%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Lei Zhu

2

1 reference

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14 March 2020

Anburaj Amaladoss

3

1 reference

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14 March 2020

Onguma Natalang

5

1 reference

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14 March 2020

Stacey A Lapp

6

1 reference

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14 March 2020

Kingsley Liew

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27322479%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Mary R Galinski

9

1 reference

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14 March 2020

Peter R Preiser

11

1 reference

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14 March 2020

publication date

22 April 2016

1 reference

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14 March 2020

1 reference

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14 March 2020

volume

7

1 reference

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14 March 2020

page(s)

255-266

1 reference

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describes a project that uses

14 March 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4909483

based on heuristic

inferred from PubMed Central ID database lookup

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Host reticulocytes provide metabolic reservoirs that can be exploited by malaria parasites

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Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum

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Noncoding RNAs as emerging regulators of Plasmodium falciparum virulence gene expression.

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Cross-species gene expression analysis of species specific differences in the preclinical assessment of pharmaceutical compounds

29 September 2017

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A transcriptional switch underlies commitment to sexual development in malaria parasites

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A cascade of DNA-binding proteins for sexual commitment and development in Plasmodium

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Small molecule Plasmodium FKBP35 inhibitor as a potential antimalaria agent

29 September 2017

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Dynamic epigenetic regulation of gene expression during the life cycle of malaria parasite Plasmodium falciparum

29 September 2017

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A transcriptomic hourglass in plant embryogenesis

29 September 2017

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The role of animal models for research on severe malaria

29 September 2017

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Genome comparison of human and non-human malaria parasites reveals species subset-specific genes potentially linked to human disease

29 September 2017

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The evolution of gene expression and the transcriptome-phenotype relationship.

29 September 2017

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TDR Targets: a chemogenomics resource for neglected diseases

29 September 2017

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Quantitative time-course profiling of parasite and host cell proteins in the human malaria parasite Plasmodium falciparum

29 September 2017

1 reference

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Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

29 September 2017

1 reference

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A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

29 September 2017

1 reference

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Gene expression divergence recapitulates the developmental hourglass model

29 September 2017

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The Apicomplexan AP2 family: integral factors regulating Plasmodium development

29 September 2017

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Measuring gene expression divergence: the distance to keep

29 September 2017

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A genotype and phenotype database of genetically modified malaria-parasites

29 September 2017

1 reference

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Defining species specific genome differences in malaria parasites

29 September 2017

1 reference

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Eating at the table of another: metabolomics of host-parasite interactions

29 September 2017

1 reference

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A problem with the correlation coefficient as a measure of gene expression divergence

29 September 2017

1 reference

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Rapid evolution of sex pheromone-producing enzyme expression in Drosophila

29 September 2017

1 reference

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Comparative evolutionary genomics of human malaria parasites

29 September 2017

1 reference

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Genomic-scale prioritization of drug targets: the TDR Targets database

29 September 2017

1 reference

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The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites

29 September 2017

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The genome of the simian and human malaria parasite Plasmodium knowlesi

29 September 2017

1 reference

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Comparative genomics of the neglected human malaria parasite Plasmodium vivax

29 September 2017

1 reference

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Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

29 September 2017

1 reference

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Gene-specific signatures of elevated non-synonymous substitution rates correlate poorly across the Plasmodium genus

29 September 2017

1 reference

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A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches

29 September 2017

1 reference

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Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution

29 September 2017

1 reference

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Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy

29 September 2017

1 reference

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Clustal W and Clustal X version 2.0

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Variant antigen gene expression in malaria

29 September 2017

1 reference

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Cellular and molecular actions of dinitroaniline and phosphorothioamidate herbicides on Plasmodium falciparum: tubulin as a specific antimalarial target

29 September 2017

1 reference

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A Plasmodium whole-genome synteny map: indels and synteny breakpoints as foci for species-specific genes

29 September 2017

1 reference

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Combinatorial gene regulation in Plasmodium falciparum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Comparative analysis of apicomplexa and genomic diversity in eukaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Plasmodium falciparum glycogen synthase kinase-3: molecular model, expression, intracellular localisation and selective inhibitors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Variant antigen expression in malaria infections: posttranscriptional gene silencing, virulence and severe pathology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Discovery of gene function by expression profiling of the malaria parasite life cycle

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

A molecular phylogeny of malarial parasites recovered from cytochrome b gene sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Genome sequence of the human malaria parasite Plasmodium falciparum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Large-scale analysis of the human and mouse transcriptomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Antigenic variation at the infected red cell surface in malaria.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Triaging informative cis-regulatory elements for the combinatorial control of temporal gene expression during Plasmodium falciparum intraerythrocytic development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

An improved Gibbs sampling method for motif discovery via sequence weighting.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

A gene-centered C. elegans protein-DNA interaction network.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Identification of regulatory elements in the Plasmodium falciparum genome.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Structure-activity relationships and inhibitory effects of various purine derivatives on the in vitro growth of Plasmodium falciparum.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4909483

Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27322479

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.EBIOM.2016.04.011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27322479%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27322479%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference