Role of hydration in the binding of lac repressor to DNA. (Q44179253)

30 November 2017

Role of hydration in the binding of lac repressor to DNA. (English)

1 reference

30 November 2017

Michael G Fried

1

1 reference

30 November 2017

Douglas F Stickle

2

1 reference

30 November 2017

Karen Vossen Smirnakis

3

1 reference

30 November 2017

Claire Adams

4

1 reference

30 November 2017

Douglas MacDonald

5

1 reference

30 November 2017

Ponzy Lu

6

1 reference

30 November 2017

language of work or name

English

0 references

publication date

11 October 2002

1 reference

Journal of Biological Chemistry

30 November 2017

1 reference

30 November 2017

277

1 reference

30 November 2017

52

1 reference

30 November 2017

50676-50682

1 reference

Ion effects on the lac repressor-operator equilibrium

30 November 2017

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Linkage of pH, anion and cation effects in protein-nucleic acid equilibria. Escherichia coli SSB protein-single stranded nucleic acid interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Cold denaturation of a repressor-operator complex: the role of entropy in protein-DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Application of pressure to biochemical equilibria: the other thermodynamic variable.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Macromolecular crowding: biochemical, biophysical, and physiological consequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

The control of protein stability and association by weak interactions with water: how do solvents affect these processes?

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Macromolecules and water: probing with osmotic stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Protein solvation in allosteric regulation: a water effect on hemoglobin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

The stabilization of proteins by osmolytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Lac repressor is a transient gene-activating protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

lac repressor acts by modifying the initial transcribing complex so that it cannot leave the promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Inhibition of transcription initiation by lac repressor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Free DNA concentration in E. coli estimated by an analysis of competition for DNA binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Crystallographic analysis of Lac repressor bound to natural operator O1

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

DNA bending by negative regulatory proteins: Gal and Lac repressors

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Crystal structure of the lactose operon repressor and its complexes with DNA and inducer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

In vitro interaction of the Escherichia coli cyclic AMP receptor protein with the lactose repressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Molecular parameters characterizing the interaction of Escherichia coli lac repressor with non-operator DNA and inducer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

A new method for sequencing DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Characterization of binding equilibrium data by a variety of fitted isotherms

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Statistical evaluation of alternative models: application to ligand--protein binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

The mechanism of CAP-lac repressor binding cooperativity at the E. coli lactose promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Ion concentration and temperature dependence of DNA binding: comparison of PurR and LacI repressor proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Thermodynamic stoichiometries of participation of water, cations and anions in specific and non-specific binding of lac repressor to DNA. Possible thermodynamic origins of the "glutamate effect" on protein-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Analytical molecular surface calculation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Role of the hydrophobic effect in stability of site-specific protein-DNA complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Coupling of local folding to site-specific binding of proteins to DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Participation of water in Hin recombinase--DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Cation Transport in Escherichia coli: V. Regulation of cation content

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Role of amino acids in osmoregulation of non-halophilic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Osmoregulation in Escherichia coli by accumulation of organic osmolytes: betaines, glutamic acid, and trehalose

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

16 Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Ion-exchange reactions of proteins during DNA binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Probing the role of water in the tryptophan repressor-operator complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Crystal structure of trp repressor/operator complex at atomic resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

RNA double-helical fragments at atomic resolution. II. The crystal structure of sodium guanylyl-3',5'-cytidine nonahydrate

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Hydrostatic and osmotic pressure as tools to study macromolecular recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Osmotic stress for the direct measurement of intermolecular forces

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Analysis of the thermodynamic linkage of DNA binding and ion binding for dimeric and tetrameric forms of the lac repressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Equilibrium studies of the cyclic AMP receptor protein-DNA interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

DNA gelation in concentrated solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Co-operative interactions between the catabolite gene activator protein and the lac repressor at the lactose promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

LINKED FUNCTIONS AND RECIPROCAL EFFECTS IN HEMOGLOBIN: A SECOND LOOK.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Thermodynamic analysis of the lactose repressor-operator DNA interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Role of macromolecular hydration in the binding of the Escherichia coli cyclic AMP receptor to DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Turgor-controlled K+ fluxes and their pathways in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Transient accumulation of potassium glutamate and its replacement by trehalose during adaptation of growing cells of Escherichia coli K-12 to elevated sodium chloride concentrations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

Macromolecular hydration changes associated with BamHI binding and catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M208540200

21 January 2018

Identifiers

DOI

10.1074/JBC.M208540200

1 reference

30 November 2017

1 reference