Covering your bases: inheritance of DNA methylation in plant genomes (Q37615687)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

Covering your bases: inheritance of DNA methylation in plant genomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Robert Schmitz

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

author name string

Chad E Niederhuth

series ordinal

1

1 reference

21 August 2017

Robert J Schmitz

series ordinal

2

1 reference

21 August 2017

22 November 2013

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

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1 March 2020

volume

7

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1 March 2020

issue

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

page(s)

472-480

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

1 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

23 August 2017

1 reference

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Extensive natural epigenetic variation at a de novo originated gene

23 August 2017

1 reference

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The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin

23 August 2017

1 reference

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Plants regenerated from tissue culture contain stable epigenome changes in rice

23 August 2017

1 reference

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Gene body methylation is conserved between plant orthologs and is of evolutionary consequence

23 August 2017

1 reference

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Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.

23 August 2017

1 reference

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Spreading of heterochromatin is limited to specific families of maize retrotransposons

23 August 2017

1 reference

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Deposition of histone variant H2A.Z within gene bodies regulates responsive genes

23 August 2017

1 reference

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Epialleles in plant evolution

23 August 2017

1 reference

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Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

23 August 2017

1 reference

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Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation

23 August 2017

1 reference

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Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Widespread dynamic DNA methylation in response to biotic stress

23 August 2017

1 reference

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Loss of DNA methylation affects the recombination landscape in Arabidopsis.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Epigenetic and epigenomic variation in Arabidopsis thaliana.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Heritable epigenetic variation among maize inbreds

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Transgenerational epigenetic instability is a source of novel methylation variants

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Genome-wide epigenetic perturbation jump-starts patterns of heritable variation found in nature

23 August 2017

1 reference

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Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis

23 August 2017

1 reference

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High-throughput approaches for plant epigenomic studies

23 August 2017

1 reference

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Conservation and divergence of methylation patterning in plants and animals

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Genome-wide evolutionary analysis of eukaryotic DNA methylation.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Genome sequence of the palaeopolyploid soybean

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

A transposon-induced epigenetic change leads to sex determination in melon

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Human DNA methylomes at base resolution show widespread epigenomic differences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Quantitative epigenetics: DNA sequence variation need not apply

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Assessing the impact of transgenerational epigenetic variation on complex traits

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Finding the fifth base: genome-wide sequencing of cytosine methylation.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Epigenetic natural variation in Arabidopsis thaliana

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

A Genetic Change Associated with the R Locus in Maize Which Is Directed and Potentially Reversible

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Two-step recruitment of RNA-directed DNA methylation to tandem repeats

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Inherited epigenetic variation--revisiting soft inheritance

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Spontaneous mutational effects on reproductive traits of arabidopsis thaliana

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

An epigenetic mutation responsible for natural variation in floral symmetry

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Arabidopsis PAI gene arrangements, cytosine methylation and expression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Paramutation of the r1 locus of maize is associated with increased cytosine methylation.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Demethylation-induced developmental pleiotropy in Arabidopsis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Allelic interactions heritably alter the activity of a metastable maize pl allele.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Paramutation, an allelic interaction, is associated with a stable and heritable reduction of transcription of the maize b regulatory gene

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Epigenetics and crop improvement

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Expression of FHIT in primary cultures of human epithelial ovarian tumors and malignant ovarian ascites.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Transgene-induced silencing identifies sequences involved in the establishment of paramutation of the maize p1 gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Epigenetic control of an endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Reconstructing de novo silencing of an active plant retrotransposon.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Patterns of population epigenomic diversity.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Rapid Establishment of Genetic Incompatibility through Natural Epigenetic Variation

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

A role for RNAi in the selective correction of DNA methylation defects.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Heritable repression due to paramutation in maize

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Epigenetic and genetic influences on DNA methylation variation in maize populations

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941479

Molecular and genetic characterization of a novel pleiotropic tomato-ripening mutant

5 November 2018

1 reference

12 December 2020

DNA METHYLATION IN PLANTS

1 reference

12 December 2020

Arabidopsis thaliana DNA methylation mutants

1 reference

12 December 2020

An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis

1 reference

12 December 2020

Identifiers

DOI

10.1093/MP/SST165

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

PubMed publication ID

24270503

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270503%20AND%20SRC:MED&resulttype=core&format=json