Epigenetic and genetic influences on DNA methylation variation in maize populations (Q57539936)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23922207%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

Epigenetic and genetic influences on DNA methylation variation in maize populations (English)

1 reference

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7 March 2020

1 reference

2

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7 March 2020

Matthew Vaughn

12

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7 March 2020

author name string

Steven R Eichten

1

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7 March 2020

Jawon Song

3

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7 March 2020

Qing Li

4

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7 March 2020

Ruth Swanson-Wagner

5

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7 March 2020

Peter J Hermanson

6

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7 March 2020

Amanda J Waters

7

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7 March 2020

Evan Starr

8

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7 March 2020

Patrick T West

9

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7 March 2020

Peter Tiffin

10

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7 March 2020

Chad L Myers

11

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7 March 2020

Nathan M Springer

13

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7 March 2020

language of work or name

English

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publication date

6 August 2013

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7 March 2020

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7 March 2020

volume

25

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7 March 2020

issue

8

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7 March 2020

page(s)

2783-2797

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The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

7 March 2020

cites work

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2 November 2018

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The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin

2 November 2018

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2 November 2018

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Mendelian and non-Mendelian regulation of gene expression in maize

2 November 2018

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Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.

2 November 2018

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Spreading of heterochromatin is limited to specific families of maize retrotransposons

2 November 2018

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CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize

2 November 2018

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'Leveling' the playing field for analyses of single-base resolution DNA methylomes.

2 November 2018

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Epigenetic responses to stress: triple defense?

2 November 2018

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Transcriptome and methylome interactions in rice hybrids.

2 November 2018

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Reshaping of the maize transcriptome by domestication.

2 November 2018

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Comparative population genomics of maize domestication and improvement

2 November 2018

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Maize HapMap2 identifies extant variation from a genome in flux.

2 November 2018

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Trans chromosomal methylation in Arabidopsis hybrids

2 November 2018

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Rapid Establishment of Genetic Incompatibility through Natural Epigenetic Variation

2 November 2018

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Genome-wide analysis of syntenic gene deletion in the grasses

2 November 2018

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Heritable epigenetic variation among maize inbreds

2 November 2018

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Spontaneous epigenetic variation in the Arabidopsis thaliana methylome.

2 November 2018

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Transgenerational epigenetic instability is a source of novel methylation variants

2 November 2018

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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

2 November 2018

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Paramutation: a process for acquiring trans-generational regulatory states

2 November 2018

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Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

2 November 2018

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Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

2 November 2018

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Establishing, maintaining and modifying DNA methylation patterns in plants and animals

2 November 2018

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2 November 2018

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

2 November 2018

1 reference

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Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

2 November 2018

1 reference

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Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome

2 November 2018

1 reference

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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

2 November 2018

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A transposon-induced epigenetic change leads to sex determination in melon

2 November 2018

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Genetic properties of the maize nested association mapping population

2 November 2018

1 reference

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Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution

2 November 2018

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Assessing the impact of transgenerational epigenetic variation on complex traits

2 November 2018

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Circos: an information aesthetic for comparative genomics

2 November 2018

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Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes.

2 November 2018

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TopHat: discovering splice junctions with RNA-Seq

2 November 2018

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An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

Epigenome dynamics: a quantitative genetics perspective.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

2 November 2018

Population epigenetics

1 reference

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Epigenetic natural variation in Arabidopsis thaliana

2 November 2018

1 reference

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Phenotypic plasticity and the epigenetics of human disease

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

Perceptions of epigenetics

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

Transposable elements and the epigenetic regulation of the genome

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

Environmental epigenomics and disease susceptibility

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

A faster circular binary segmentation algorithm for the analysis of array CGH data

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

Inherited epigenetic variation--revisiting soft inheritance

2 November 2018

1 reference

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Organization and variability of the maize genome

2 November 2018

1 reference

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The maize genome as a model for efficient sequence analysis of large plant genomes

2 November 2018

1 reference

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Molecular and functional diversity of maize

2 November 2018

1 reference

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Gardening the genome: DNA methylation in Arabidopsis thaliana

2 November 2018

1 reference

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Role of transposable elements in heterochromatin and epigenetic control

2 November 2018

1 reference

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2 November 2018

Paramutation in maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

An epigenetic mutation responsible for natural variation in floral symmetry

2 November 2018

1 reference

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Arabidopsis PAI gene arrangements, cytosine methylation and expression

2 November 2018

1 reference

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Hypermethylated SUPERMAN epigenetic alleles in arabidopsis

2 November 2018

1 reference

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Epigenetic control of an endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784580

Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population

2 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23922207

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23922207