What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory (Q38206369)

31 August 2017

What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory (English)

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31 August 2017

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1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24755934%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

author name string

Leonie Ringrose

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24755934%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

publication date

1 May 2014

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Nature Reviews Molecular Cell Biology

31 August 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24755934%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

volume

15

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24755934%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

issue

5

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24755934%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

page(s)

340-356

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24755934%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nrm3789

31 May 2020

exact match

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cites work

Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins

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Polycomb comes of age: genome-wide profiling of target sites

31 March 2020

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Genome regulation by polycomb and trithorax proteins

31 March 2020

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The Polycomb complex PRC2 and its mark in life

31 March 2020

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Murine Polycomb- and trithorax-group genes regulate homeotic pathways and beyond.

31 March 2020

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Introduction to Trx-G and Pc-G genes.

31 March 2020

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Epigenetic control of embryonic stem cell fate

31 March 2020

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Factor mediated gene priming in pluripotent stem cells sets the stage for lineage specification

31 March 2020

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The ABC of the BX-C: the bithorax complex explained

31 March 2020

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Epigenetic regulation of vertebrate Hox genes: a dynamic equilibrium

31 March 2020

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Chromatin state maps: new technologies, new insights

31 March 2020

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Elements of the Drosophila bithorax complex that mediate repression by Polycomb group products.

31 March 2020

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The Drosophila Fab-7 chromosomal element conveys epigenetic inheritance during mitosis and meiosis.

31 March 2020

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Epigenetic inheritance of active chromatin after removal of the main transactivator.

31 March 2020

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Transcription through intergenic chromosomal memory elements of the Drosophila bithorax complex correlates with an epigenetic switch

31 March 2020

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A cellular memory module conveys epigenetic inheritance of hedgehog expression during Drosophila wing imaginal disc development

31 March 2020

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Enhancer-PRE communication contributes to the expansion of gene expression domains in proliferating primordia.

31 March 2020

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Long range repression conferring boundaries of Ultrabithorax expression in the Drosophila embryo

31 March 2020

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Silencers in abdominal-B, a homeotic Drosophila gene.

31 March 2020

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Functional analysis of repressor binding sites in the iab-2 regulatory region of the abdominal-A homeotic gene

31 March 2020

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Characterization of new regulatory elements within the Drosophila bithorax complex.

31 March 2020

1 reference

Polycomb/Trithorax response elements and epigenetic memory of cell identity

31 March 2020

1 reference

Polycomb group response elements in Drosophila and vertebrates

31 March 2020

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The role of Polycomb-group response elements in regulation of engrailed transcription in Drosophila

31 March 2020

1 reference

Quantitative analysis of polycomb response elements (PREs) at identical genomic locations distinguishes contributions of PRE sequence and genomic environment.

31 March 2020

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31 March 2020

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In situ dissection of a Polycomb response element in Drosophila melanogaster

31 March 2020

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Replacement of a Drosophila Polycomb response element core, and in situ analysis of its DNA motifs

31 March 2020

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A vertebrate Polycomb response element governs segmentation of the posterior hindbrain

31 March 2020

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GC-rich sequence elements recruit PRC2 in mammalian ES cells

31 March 2020

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A region of the human HOXD cluster that confers polycomb-group responsiveness

31 March 2020

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Identification and characterization of Bmi-1-responding element within the human p16 promoter

31 March 2020

1 reference

An interspecies analysis reveals a key role for unmethylated CpG dinucleotides in vertebrate Polycomb complex recruitment

31 March 2020

1 reference

A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy

31 March 2020

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Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting

31 March 2020

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Variable requirements for DNA-binding proteins at polycomb-dependent repressive regions in human HOX clusters

31 March 2020

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Memories from the polycomb group proteins.

31 March 2020

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Occupying Chromatin: Polycomb Mechanisms for Getting to Genomic Targets, Stopping Transcriptional Traffic, and Staying Put

31 March 2020

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Mechanisms of polycomb gene silencing: knowns and unknowns

31 March 2020

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Trithorax group proteins: switching genes on and keeping them active

31 March 2020

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Inner workings and regulatory inputs that control Polycomb repressive complex 2

31 March 2020

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The histone methyltransferases Trithorax and Ash1 prevent transcriptional silencing by Polycomb group proteins

31 March 2020

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H3K36 methylation antagonizes PRC2-mediated H3K27 methylation

31 March 2020

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Histone methylation by PRC2 is inhibited by active chromatin marks

31 March 2020

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CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing.

31 March 2020

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Trithorax monomethylates histone H3K4 and interacts directly with CBP to promote H3K27 acetylation and antagonize Polycomb silencing.

31 March 2020

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Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes

31 March 2020

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Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36

31 March 2020

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Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

31 March 2020

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Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs

31 March 2020

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BRD4 is an atypical kinase that phosphorylates serine2 of the RNA polymerase II carboxy-terminal domain

31 March 2020

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Chromatin compaction by a polycomb group protein complex

31 March 2020

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Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination

31 March 2020

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Histone H2A mono-ubiquitination is a crucial step to mediate PRC1-dependent repression of developmental genes to maintain ES cell identity

31 March 2020

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Regulation of nucleosome dynamics by histone modifications

31 March 2020

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General transcriptional silencing by a Polycomb response element in Drosophila

31 March 2020

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Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins

31 March 2020

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Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins

31 March 2020

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Alternative epigenetic chromatin states of polycomb target genes

31 March 2020

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Chromatin inheritance upon Zeste-mediated Brahma recruitment at a minimal cellular memory module

31 March 2020

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Polycomb group proteins bind an engrailed PRE in both the "ON" and "OFF" transcriptional states of engrailed

31 March 2020

1 reference

Identification and characterization of polyhomeotic PREs and TREs

31 March 2020

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Trithorax is required to maintain engrailed expression in a subset of engrailed-expressing cells

31 March 2020

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Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene

31 March 2020

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Dual function of histone H3 lysine 36 methyltransferase ASH1 in regulation of Hox gene expression

31 March 2020

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Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing

31 March 2020

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A histone mutant reproduces the phenotype caused by loss of histone-modifying factor Polycomb.

31 March 2020

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Transcriptional repression by Drosophila and mammalian Polycomb group proteins in transfected mammalian cells

31 March 2020

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Pleiohomeotic can link polycomb to DNA and mediate transcriptional repression

31 March 2020

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A model for transmission of the H3K27me3 epigenetic mark

31 March 2020

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Transcriptional repression mediated by the human polycomb-group protein EED involves histone deacetylation

31 March 2020

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Proteolytic cleavage of MLL generates a complex of N- and C-terminal fragments that confers protein stability and subnuclear localization

31 March 2020

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Proteolysis of MLL family proteins is essential for taspase1-orchestrated cell cycle progression.

31 March 2020

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Species selectivity of mixed-lineage leukemia/trithorax and HCF proteolytic maturation pathways

31 March 2020

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Epigenetic inheritance during the cell cycle

31 March 2020

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Chromatin replication and epigenome maintenance

31 March 2020

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

31 March 2020

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Polycomb preferentially targets stalled promoters of coding and noncoding transcripts

31 March 2020

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Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans

31 March 2020

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PcG complexes set the stage for epigenetic inheritance of gene silencing in early S phase before replication

31 March 2020

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A bridging model for persistence of a polycomb group protein complex through DNA replication in vitro

31 March 2020

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Establishment of histone modifications after chromatin assembly

31 March 2020

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A model for mitotic inheritance of histone lysine methylation

31 March 2020

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TrxG and PcG proteins but not methylated histones remain associated with DNA through replication

31 March 2020

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Patterns and mechanisms of ancestral histone protein inheritance in budding yeast.

31 March 2020

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A rapid and efficient method to purify proteins at replication forks under native conditions.

31 March 2020

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PcG-mediated higher-order chromatin structures modulate replication programs at the Drosophila BX-C.

31 March 2020

1 reference

A motif within SET-domain proteins binds single-stranded nucleic acids and transcribed and supercoiled DNAs and can interfere with assembly of nucleosomes.

31 March 2020

1 reference

Polycomb proteins remain bound to chromatin and DNA during DNA replication in vitro

31 March 2020

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Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains

31 March 2020

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Structural basis for specific binding of Polycomb chromodomain to histone H3 methylated at Lys 27

31 March 2020

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Role of the polycomb protein EED in the propagation of repressive histone marks

31 March 2020

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Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation

31 March 2020

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Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication

31 March 2020

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Concerted epigenetic signatures inheritance at PcG targets through replication.

31 March 2020

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Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription

31 March 2020

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Mitotic repression of the transcriptional machinery.

31 March 2020

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Chromatin higher-order structure and dynamics

31 March 2020

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Condensed mitotic chromatin is accessible to transcription factors and chromatin structural proteins

31 March 2020

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The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics

31 March 2020

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Displacement of sequence-specific transcription factors from mitotic chromatin

31 March 2020

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Mitotic bookmarking by transcription factors

31 March 2020

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Mitotic transcription repression in vivo in the absence of nucleosomal chromatin condensation

31 March 2020

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Talking to chromatin: post-translational modulation of polycomb group function.

31 March 2020

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Cyclin-dependent kinases regulate epigenetic gene silencing through phosphorylation of EZH2

31 March 2020

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Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA

31 March 2020

1 reference

The distribution of polycomb-group proteins during cell division and development in Drosophila embryos: impact on models for silencing.

31 March 2020

1 reference

Pipsqueak and GAGA factor act in concert as partners at homeotic and many other loci

31 March 2020

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Polycomb group protein-associated chromatin is reproduced in post-mitotic G1 phase and is required for S phase progression.

31 March 2020

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The trithorax group and Pc group proteins are differentially involved in heterochromatin formation in Drosophila

31 March 2020

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Different polycomb group CBX family proteins associate with distinct regions of chromatin using nonhomologous protein sequences

31 March 2020

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A reconfigured pattern of MLL occupancy within mitotic chromatin promotes rapid transcriptional reactivation following mitotic exit.

31 March 2020

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Brd4 marks select genes on mitotic chromatin and directs postmitotic transcription

31 March 2020

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Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation

31 March 2020

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In vivo Polycomb kinetics and mitotic chromatin binding distinguish stem cells from differentiated cells

31 March 2020

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A polycomb group protein is retained at specific sites on chromatin in mitosis

31 March 2020

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Quantitative in vivo analysis of chromatin binding of Polycomb and Trithorax group proteins reveals retention of ASH1 on mitotic chromatin.

31 March 2020

1 reference

The multidomain protein Brpf1 binds histones and is required for Hox gene expression and segmental identity

31 March 2020

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Histone modifications and mitosis: countermarks, landmarks, and bookmarks

31 March 2020

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Histone H3 phosphorylation - a versatile chromatin modification for different occasions.

31 March 2020

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A phospho/methyl switch at histone H3 regulates TFIID association with mitotic chromosomes.

31 March 2020

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Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin

31 March 2020

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Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation

31 March 2020

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Polycomb group protein displacement and gene activation through MSK-dependent H3K27me3S28 phosphorylation

31 March 2020

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Epigenetic memory of active gene transcription is inherited through somatic cell nuclear transfer

31 March 2020

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Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription

31 March 2020

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Methylation of H3K4 Is required for inheritance of active transcriptional states.

31 March 2020

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Transcription in the absence of histone H3.2 and H3K4 methylation.

31 March 2020

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Dynamics and memory of heterochromatin in living cells.

31 March 2020

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How does noncoding transcription regulate Hox genes?

31 March 2020

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Non-coding RNAs in polycomb/trithorax regulation.

31 March 2020

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Genome regulation by long noncoding RNAs.

31 March 2020

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Marking of active genes on mitotic chromosomes

31 March 2020

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DNA Segments Sensitive to Single-Strand-Specific Nucleases Are Present in Chromatin of Mitotic Cells

31 March 2020

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Bookmarking genes for activation in condensed mitotic chromosomes

31 March 2020

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Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster

31 March 2020

1 reference

A conserved role for human Nup98 in altering chromatin structure and promoting epigenetic transcriptional memory

31 March 2020

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A physiological role for gene loops in yeast.

31 March 2020

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Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes

31 March 2020

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Tissue-specific mitotic bookmarking by hematopoietic transcription factor GATA1.

31 March 2020

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Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites

31 March 2020

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Polycomb purification by in vivo biotinylation tagging reveals cohesin and Trithorax group proteins as interaction partners

31 March 2020

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Distinct isoforms of the Drosophila Brd4 homologue are present at enhancers, promoters and insulator sites

31 March 2020

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Cohesin and polycomb proteins functionally interact to control transcription at silenced and active genes

31 March 2020

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The iab-7 polycomb response element maps to a nucleosome-free region of chromatin and requires both GAGA and pleiohomeotic for silencing activity

31 March 2020

1 reference

Histone replacement marks the boundaries of cis-regulatory domains

31 March 2020

1 reference

Role of histone H3 lysine 27 methylation in Polycomb-group silencing

31 March 2020

1 reference

Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites

31 March 2020

1 reference

Histone methyltransferase activity of a Drosophila Polycomb group repressor complex

31 March 2020

1 reference

Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein

31 March 2020

1 reference

Histone H2A monoubiquitination and Polycomb repression: the missing pieces of the puzzle

31 March 2020

1 reference

Trithorax-group protein ASH1 methylates histone H3 lysine 36.

31 March 2020

1 reference

Crystal structure of the human histone methyltransferase ASH1L catalytic domain and its implications for the regulatory mechanism

31 March 2020

1 reference

MLL targets SET domain methyltransferase activity to Hox gene promoters

31 March 2020

1 reference

ALL-1 is a histone methyltransferase that assembles a supercomplex of proteins involved in transcriptional regulation

31 March 2020

1 reference

Modulation of heat shock gene expression by the TAC1 chromatin-modifying complex.

31 March 2020

1 reference

Chromatin dynamics at the replication fork: there's more to life than histones

31 March 2020

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Chromatin assembly on replicating DNA in vitro

31 March 2020

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Epigenetics meets mathematics: towards a quantitative understanding of chromatin biology

31 March 2020

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A Polycomb response element in the Ubx gene that determines an epigenetically inherited state of repression

31 March 2020

1 reference

12 December 2020

The Drosophila trithorax protein is a coactivator required to prevent re-establishment of polycomb silencing.

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12 December 2020

Direct interaction of the Polycomb protein with Antennapedia regulatory sequences in polytene chromosomes of Drosophila melanogaster

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12 December 2020

Transcriptional silencing by the Polycomb protein in Drosophila embryos

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12 December 2020

Hunchback-independent silencing of late Ubx enhancers by a Polycomb Group Response Element

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12 December 2020

Recruitment of components of Polycomb Group chromatin complexes in Drosophila.

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12 December 2020

Bookmarking genes for activation in condensed mitotic chromosomes

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12 December 2020

The Fab-8 boundary defines the distal limit of the bithorax complex iab-7 domain and insulates iab-7 from initiation elements and a PRE in the adjacent iab-8 domain.

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12 December 2020

Polycomb group proteins and heritable silencing of Drosophila Hox genes.

1 reference

12 December 2020

Discrete Polycomb-binding sites in each parasegmental domain of the bithorax complex.

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12 December 2020

A Polycomb and GAGA dependent silencer adjoins the Fab-7 boundary in the Drosophila bithorax complex

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12 December 2020

In situ dissection of the Fab-7 region of the bithorax complex into a chromatin domain boundary and a Polycomb-response element.

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12 December 2020

Su(z)12, a novel Drosophila Polycomb group gene that is conserved in vertebrates and plants

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12 December 2020

Regulation of global acetylation in mitosis through loss of histone acetyltransferases and deacetylases from chromatin.

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12 December 2020

Stepwise assembly of chromatin during DNA replication in vitro

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12 December 2020

Ten different Polycomb group genes are required for spatial control of the abdA and AbdB homeotic products

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12 December 2020

Long-range repression by multiple polycomb group (PcG) proteins targeted by fusion to a defined DNA-binding domain in Drosophila

1 reference

12 December 2020

A complex array of DNA-binding proteins required for pairing-sensitive silencing by a polycomb group response element from the Drosophila engrailed gene.

1 reference

12 December 2020

Identification of Polycomb and trithorax group responsive elements in the regulatory region of the Drosophila homeotic gene Sex combs reduced

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12 December 2020