Chromatin replication and epigenome maintenance (Q34256428)

31 July 2017

title

Chromatin replication and epigenome maintenance (English)

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31 July 2017

2

Anja Groth

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author name string

Constance Alabert

series ordinal

1

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31 July 2017

publication date

23 February 2012

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Nature Reviews Molecular Cell Biology

31 July 2017

published in

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31 July 2017

volume

13

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31 July 2017

issue

3

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31 July 2017

page(s)

153-167

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Epigenetic inheritance during the cell cycle

31 July 2017

cites work

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Chromatin challenges during DNA replication and repair

21 January 2018

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Locking the genome: nuclear organization and cell fate

21 January 2018

1 reference

How dormant origins promote complete genome replication

21 January 2018

1 reference

Maintaining genome stability at the replication fork

21 January 2018

1 reference

An oncogene-induced DNA damage model for cancer development

21 January 2018

1 reference

21 January 2018

Epigenetics in cancer

1 reference

Replication stress, a source of epigenetic aberrations in cancer?

21 January 2018

1 reference

Chromatin modifications and their function

21 January 2018

1 reference

Eukaryotic DNA replication origins: many choices for appropriate answers

21 January 2018

1 reference

Eukaryotic DNA replication control: lock and load, then fire

21 January 2018

1 reference

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site

21 January 2018

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Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

21 January 2018

1 reference

Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone

21 January 2018

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Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

21 January 2018

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Interaction between HMGA1a and the origin recognition complex creates site-specific replication origins

21 January 2018

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ORC binding to TRF2 stimulates OriP replication

21 January 2018

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Heterochromatin protein 1 (HP1) modulates replication timing of the Drosophila genome

21 January 2018

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The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells.

21 January 2018

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SET8 is degraded via PCNA-coupled CRL4(CDT2) ubiquitylation in S phase and after UV irradiation

21 January 2018

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CRL4Cdt2-Mediated Destruction of the Histone Methyltransferase Set8 Prevents Premature Chromatin Compaction in S Phase

21 January 2018

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Mitotic-specific methylation of histone H4 Lys 20 follows increased PR-Set7 expression and its localization to mitotic chromosomes

21 January 2018

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HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin

21 January 2018

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HBO1 histone acetylase is a coactivator of the replication licensing factor Cdt1

21 January 2018

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Regulation of replication licensing by acetyltransferase Hbo1.

21 January 2018

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Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing

21 January 2018

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GINS maintains association of Cdc45 with MCM in replisome progression complexes at eukaryotic DNA replication forks

21 January 2018

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Dormant origins licensed by excess Mcm2-7 are required for human cells to survive replicative stress.

21 January 2018

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Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication.

21 January 2018

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Replication fork movement sets chromatin loop size and origin choice in mammalian cells

21 January 2018

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Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells

21 January 2018

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Clusters, factories and domains: The complex structure of S-phase comes into focus.

21 January 2018

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A relationship between replicon size and supercoiled loop domains in the eukaryotic genome.

21 January 2018

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Cohesin organizes chromatin loops at DNA replication factories.

21 January 2018

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Space and time in the nucleus: developmental control of replication timing and chromosome architecture

21 January 2018

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Global reorganization of replication domains during embryonic stem cell differentiation

21 January 2018

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Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

21 January 2018

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Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing.

21 January 2018

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Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

21 January 2018

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Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome

21 January 2018

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 January 2018

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Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

21 January 2018

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DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes

21 January 2018

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Polycomb proteins remain bound to chromatin and DNA during DNA replication in vitro

21 January 2018

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Highly stable loading of Mcm proteins onto chromatin in living cells requires replication to unload

21 January 2018

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Chromatin decondensation in S-phase involves recruitment of Cdk2 by Cdc45 and histone H1 phosphorylation

21 January 2018

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Replication factory activation can be decoupled from the replication timing program by modulating Cdk levels.

21 January 2018

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The Dynamic Mobility of Histone H1 Is Regulated by Cyclin/CDK Phosphorylation

21 January 2018

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Linker histone phosphorylation regulates global timing of replication origin firing

21 January 2018

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Reversal of terminal differentiation and control of DNA replication: cyclin A and Cdk2 specifically localize at subnuclear sites of DNA replication

21 January 2018

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A direct interaction between proliferating cell nuclear antigen (PCNA) and Cdk2 targets PCNA-interacting proteins for phosphorylation

21 January 2018

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Cyclin A Promotes S-Phase Entry via Interaction with the Replication Licensing Factor Mcm7

21 January 2018

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Cyclin A-Cdk1 regulates the origin firing program in mammalian cells

21 January 2018

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Structure of replicating simian virus 40 minichromosomes. The replication fork, core histone segregation and terminal structures

21 January 2018

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The stability of nucleosomes at the replication fork

21 January 2018

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Replicating chromatin: a tale of histones

21 January 2018

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Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly

21 January 2018

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Patterns and mechanisms of ancestral histone protein inheritance in budding yeast.

21 January 2018

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Binding of human minichromosome maintenance proteins with histone H3

21 January 2018

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Regulation of replication fork progression through histone supply and demand

21 January 2018

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Structural basis for the histone chaperone activity of Asf1

21 January 2018

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Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4

21 January 2018

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Identification of the MMS22L-TONSL complex that promotes homologous recombination

21 January 2018

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Functional cooperation between FACT and MCM helicase facilitates initiation of chromatin DNA replication

21 January 2018

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The structure of the yFACT Pob3-M domain, its interaction with the DNA replication factor RPA, and a potential role in nucleosome deposition

21 January 2018

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The Saccharomyces cerevisiae DNA polymerase alpha catalytic subunit interacts with Cdc68/Spt16 and with Pob3, a protein similar to an HMG1-like protein

21 January 2018

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The histone chaperone facilitates chromatin transcription (FACT) protein maintains normal replication fork rates

21 January 2018

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Histone chaperone FACT coordinates nucleosome interaction through multiple synergistic binding events

21 January 2018

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Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail

21 January 2018

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Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro

21 January 2018

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The program for processing newly synthesized histones H3.1 and H4

21 January 2018

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Sequential establishment of marks on soluble histones H3 and H4.

21 January 2018

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Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4.

21 January 2018

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PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state

21 January 2018

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The RCAF complex mediates chromatin assembly during DNA replication and repair

21 January 2018

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Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway

21 January 2018

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Structure of a CENP-A-histone H4 heterodimer in complex with chaperone HJURP

21 January 2018

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Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis

21 January 2018

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Human Asf1 regulates the flow of S phase histones during replicational stress

21 January 2018

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Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity.

21 January 2018

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The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

21 January 2018

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Phosphorylation of H4 Ser 47 promotes HIRA-mediated nucleosome assembly.

21 January 2018

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A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response.

21 January 2018

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A role for Gcn5 in replication-coupled nucleosome assembly

21 January 2018

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Acetylation of histone H3 lysine 56 regulates replication-coupled nucleosome assembly

21 January 2018

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CBP/p300-mediated acetylation of histone H3 on lysine 56

21 January 2018

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The HP1alpha-CAF1-SetDB1-containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin

21 January 2018

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The HP1-p150/CAF-1 interaction is required for pericentric heterochromatin replication and S-phase progression in mouse cells

21 January 2018

1 reference

Heterochromatin Dynamics in Mouse Cells

21 January 2018

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Heterochromatin establishment in the context of genome-wide epigenetic reprogramming

21 January 2018

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Chromatin structure and the inheritance of epigenetic information

21 January 2018

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CELLULAR DNA REPLICASES: Components and Dynamics at the Replication Fork

21 January 2018

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Replication-dependent marking of DNA by PCNA facilitates CAF-1-coupled inheritance of chromatin

21 January 2018

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A CAF-1-PCNA-mediated chromatin assembly pathway triggered by sensing DNA damage

21 January 2018

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Human DNA ligase I efficiently seals nicks in nucleosomes

21 January 2018

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Flap endonuclease 1 efficiently cleaves base excision repair and DNA replication intermediates assembled into nucleosomes

21 January 2018

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The role of the DNA sliding clamp in Okazaki fragment maturation in archaea and eukaryotes

21 January 2018

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The histone chaperone Nap1 promotes nucleosome assembly by eliminating nonnucleosomal histone DNA interactions

21 January 2018

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Cohesin: a catenase with separate entry and exit gates?

21 January 2018

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Establishment of sister chromatid cohesion at the S. cerevisiae replication fork

21 January 2018

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The alternative Ctf18-Dcc1-Ctf8-replication factor C complex required for sister chromatid cohesion loads proliferating cell nuclear antigen onto DNA

21 January 2018

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Cohesin acetylation speeds the replication fork

21 January 2018

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DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters

21 January 2018

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Replication-coupled chromatin assembly generates a neuronal bilateral asymmetry in C. elegans

21 January 2018

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Vertebrate HoxB gene expression requires DNA replication.

21 January 2018

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RNA interference guides histone modification during the S phase of chromosomal replication.

21 January 2018

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Cell cycle control of centromeric repeat transcription and heterochromatin assembly

21 January 2018

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Influence of histone acetylation on the solubility, H1 content and DNase I sensitivity of newly assembled chromatin

21 January 2018

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Reversible disruption of pericentric heterochromatin and centromere function by inhibiting deacetylases

21 January 2018

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Inhibition of histone deacetylase in cancer cells slows down replication forks, activates dormant origins, and induces DNA damage

21 January 2018

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Hdac3 Is Essential for the Maintenance of Chromatin Structure and Genome Stability

21 January 2018

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Analysis of protein dynamics at active, stalled, and collapsed replication forks.

21 January 2018

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Proliferating cell nuclear antigen associates with histone deacetylase activity, integrating DNA replication and chromatin modification

21 January 2018

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Maintenance of silent chromatin through replication requires SWI/SNF-like chromatin remodeler SMARCAD1

21 January 2018

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Duplication and maintenance of heterochromatin domains

21 January 2018

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Shifts in replication timing actively affect histone acetylation during nucleosome reassembly

21 January 2018

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Rethinking how DNA methylation patterns are maintained

21 January 2018

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Identification of DNMT1 (DNA methyltransferase 1) hypomorphs in somatic knockouts suggests an essential role for DNMT1 in cell survival

21 January 2018

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Dynamics of Dnmt1 interaction with the replication machinery and its role in postreplicative maintenance of DNA methylation

21 January 2018

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Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation

21 January 2018

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The Williams syndrome transcription factor interacts with PCNA to target chromatin remodelling by ISWI to replication foci

21 January 2018

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Establishment of histone modifications after chromatin assembly

21 January 2018

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A model for mitotic inheritance of histone lysine methylation

21 January 2018

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Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication

21 January 2018

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Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly

21 January 2018

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Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis

21 January 2018

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Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases.

21 January 2018

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RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.

21 January 2018

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Coordination of DNA replication and histone modification by the Rik1-Dos2 complex

21 January 2018

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Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle

21 January 2018

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PcG complexes set the stage for epigenetic inheritance of gene silencing in early S phase before replication

21 January 2018

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Theoretical analysis of epigenetic cell memory by nucleosome modification.

21 January 2018

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Functional mammalian homologues of the Drosophila PEV-modifier Su(var)3-9 encode centromere-associated proteins which complex with the heterochromatin component M31

21 January 2018

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A model for transmission of the H3K27me3 epigenetic mark

21 January 2018

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Role of the polycomb protein EED in the propagation of repressive histone marks

21 January 2018

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Progressive methylation of ageing histones by Dot1 functions as a timer.

21 January 2018

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Kinetics of re-establishing H3K79 methylation marks in global human chromatin.

21 January 2018

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Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene

21 January 2018

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Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability

21 January 2018

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Induction of Tumors in Mice by Genomic Hypomethylation

21 January 2018

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Increased methylation variation in epigenetic domains across cancer types

21 January 2018

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Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer

21 January 2018

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Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells

21 January 2018

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Chromatin assembly controls replication fork stability.

21 January 2018

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Saccharomyces cerevisiae chromatin-assembly factors that act during DNA replication function in the maintenance of genome stability.

21 January 2018

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The absence of the yeast chromatin assembly factor Asf1 increases genomic instability and sister chromatid exchange

21 January 2018

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The Rtt109 histone acetyltransferase facilitates error-free replication to prevent CAG/CTG repeat contractions

21 January 2018

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Elevated Histone Expression Promotes Life Span Extension

21 January 2018

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Reduced histone biosynthesis and chromatin changes arising from a damage signal at telomeres

21 January 2018

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Role for hACF1 in the G2/M damage checkpoint

21 January 2018

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Nucleotide deficiency promotes genomic instability in early stages of cancer development

21 January 2018

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Epigenetic instability due to defective replication of structured DNA.

21 January 2018

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Variable effects of DNA-synthesis inhibitors upon DNA methylation in mammalian cells

21 January 2018

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Ubiquitin-dependent DNA damage bypass is separable from genome replication

21 January 2018

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Mutations in deoxyribonucleotide biosynthesis pathway cause spreading of silencing across heterochromatic barriers at the mating-type region of the fission yeast

21 January 2018

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CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR.

21 January 2018

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Tight protein-DNA interactions favor gene silencing.

21 January 2018

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Expandable DNA repeats and human disease.

21 January 2018

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Interplay between oncogene-induced DNA damage response and heterochromatin in senescence and cancer.

21 January 2018

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Ino80 chromatin remodeling complex promotes recovery of stalled replication forks

21 January 2018

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Involvement of a chromatin remodeling complex in damage tolerance during DNA replication

21 January 2018

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The Ino80 chromatin-remodeling enzyme regulates replisome function and stability.

21 January 2018

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The MMS22L-TONSL complex mediates recovery from replication stress and homologous recombination

21 January 2018

1 reference

A genome-wide camptothecin sensitivity screen identifies a mammalian MMS22L-NFKBIL2 complex required for genomic stability

21 January 2018

1 reference

RNAi-based screening identifies the Mms22L-Nfkbil2 complex as a novel regulator of DNA replication in human cells

21 January 2018

1 reference

BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis.

21 January 2018

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DNA mediated chromatin pull-down for the study of chromatin replication.

21 January 2018

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The Mcm complex: unwinding the mechanism of a replicative helicase.

21 January 2018

1 reference

The structural basis for MCM2-7 helicase activation by GINS and Cdc45.

21 January 2018

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Selective bypass of a lagging strand roadblock by the eukaryotic replicative DNA helicase.

21 January 2018

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Differences in the DNA replication of unicellular eukaryotes and metazoans: known unknowns

21 January 2018

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Association of the origin recognition complex with heterochromatin and HP1 in higher eukaryotes

21 January 2018

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Human origin recognition complex is essential for HP1 binding to chromatin and heterochromatin organization.

21 January 2018

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Role of interactions between the origin recognition complex and SIR1 in transcriptional silencing

21 January 2018

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Histone acetyltransferase HBO1 interacts with the ORC1 subunit of the human initiator protein

21 January 2018

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Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1

21 January 2018

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A WD-Repeat Protein Stabilizes ORC Binding to Chromatin

21 January 2018

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Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by geminin

21 January 2018

1 reference

S. pombe replication protein Cdc18 (Cdc6) interacts with Swi6 (HP1) heterochromatin protein: region specific effects and replication timing in the centromere.

21 January 2018

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ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation

21 January 2018

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Direct interaction between cohesin complex and DNA replication machinery

21 January 2018

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Histone deposition protein Asf1 maintains DNA replisome integrity and interacts with replication factor C.

21 January 2018

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Human DNA-(Cytosine-5) Methyltransferase-PCNA Complex as a Target for p21WAF1

21 January 2018

1 reference

The highly conserved nuclear lamin Ig-fold binds to PCNA: its role in DNA replication

21 January 2018

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PCNA controls establishment of sister chromatid cohesion during S phase

21 January 2018

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Direct interaction between SET8 and proliferating cell nuclear antigen couples H4-K20 methylation with DNA replication

21 January 2018

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The histone methyltransferase SET8 is required for S-phase progression

21 January 2018

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Proliferating cell nuclear antigen is required for loading of the SMCX/KMD5C histone demethylase onto chromatin

21 January 2018

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Transcription coactivator p300 binds PCNA and may have a role in DNA repair synthesis

21 January 2018

1 reference

Regulation of human flap endonuclease-1 activity by acetylation through the transcriptional coactivator p300

21 January 2018

1 reference

Acetylation of Dna2 endonuclease/helicase and flap endonuclease 1 by p300 promotes DNA stability by creating long flap intermediates

21 January 2018

1 reference

Replication Stress Interferes with Histone Recycling and Predeposition Marking of New Histones

21 January 2018

1 reference

Multiple Mechanisms Control Chromosome Integrity after Replication Fork Uncoupling and Restart at Irreparable UV Lesions

21 January 2018

1 reference

DNA triplet repeats mediate heterochromatin-protein-1-sensitive variegated gene silencing

21 January 2018

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Unwinding of chromatin by the SV40 large T antigen DNA helicase.

21 January 2018

1 reference

The role of FACT in making and breaking nucleosomes

31 March 2020

1 reference

Assembling chromatin: the long and winding road

31 March 2020

1 reference

A specific function for the histone chaperone NASP to fine-tune a reservoir of soluble H3-H4 in the histone supply chain

31 March 2020

1 reference

New Histone Incorporation Marks Sites of UV Repair in Human Cells

31 March 2020

1 reference

A reevaluation of new histone deposition on replicating chromatin

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22358331

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Histone deacetylation is required for the maturation of newly replicated chromatin

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22358331

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Heterochromatin dynamics in mouse cells: interaction between chromatin assembly factor 1 and HP1 proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22358331

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRM3288

1 reference

Dimensions Publication ID

31 July 2017

1045727917

0 references

1 reference