Mechanisms of DNA Transposition (Q38536147)

3 September 2017

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title

Mechanisms of DNA Transposition (English)

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3 September 2017

Alison B Hickman

1

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3 September 2017

Fred Dyda

series ordinal

2

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3 September 2017

publication date

1 April 2015

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3 September 2017

published in

Microbiology Spectrum

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3 September 2017

volume

3

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3 September 2017

issue

2

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3 September 2017

page(s)

MDNA3-0034-2014

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Resident aliens: the Tc1/mariner superfamily of transposable elements

3 September 2017

cites work

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12 December 2020

Involvement of a bifunctional, paired-like DNA-binding domain and a transpositional enhancer in Sleeping Beauty transposition

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12 December 2020

Efficient transposition of IS911 circles in vitro.

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12 December 2020

IS200/IS605 family single-strand transposition: mechanism of IS608 strand transfer

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12 December 2020

Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases

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12 December 2020

Structural evidence for a two-metal-ion mechanism of group I intron splicing

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12 December 2020

Switching from cut-and-paste to replicative Tn7 transposition.

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12 December 2020

The phage Mu transpososome core: DNA requirements for assembly and function

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12 December 2020

RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons

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12 December 2020

A mechanism for Tn5 inhibition. carboxyl-terminal dimerization

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12 December 2020

Artificial reaction coordinate "tunneling" in free-energy calculations: the catalytic reaction of RNase H.

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12 December 2020

Solution structure of the Mu end DNA-binding ibeta subdomain of phage Mu transposase: modular DNA recognition by two tethered domains.

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12 December 2020

Target capture during Mos1 transposition

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12 December 2020

Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release

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12 December 2020

Single-stranded DNA intermediates in IS91 rolling-circle transposition

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12 December 2020

Disassembly of the Mu transposase tetramer by the ClpX chaperone

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12 December 2020

Assay for Movement of Lepidopteran Transposon IFP2 in Insect Cells Using a Baculovirus Genome as a Target DNA

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12 December 2020

Drosophila P-element transposase is a novel site-specific endonuclease

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12 December 2020

Stimulation of V(D)J cleavage by high mobility group proteins

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12 December 2020

V(D)J recombination: mechanisms of initiation

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12 December 2020

Identification and characterization of repetitive extragenic palindromes (REP)-associated tyrosine transposases: implications for REP evolution and dynamics in bacterial genomes

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12 December 2020

Structure of a synaptic gammadelta resolvase tetramer covalently linked to two cleaved DNAs

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12 December 2020

The mechanism of retroviral integration from X-ray structures of its key intermediates

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12 December 2020

Transpososome dynamics and regulation in Tn10 transposition

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12 December 2020

Site-specific HU binding in the Mu transpososome: conversion of a sequence-independent DNA-binding protein into a chemical nuclease

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12 December 2020

Rolling-circle transposons in eukaryotes

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12 December 2020

Target DNA bending is an important specificity determinant in target site selection in Tn10 transposition

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12 December 2020

A purified mariner transposase is sufficient to mediate transposition in vitro

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12 December 2020

Structural classification of HTH DNA-binding domains and protein-DNA interaction modes

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12 December 2020

Drosophila IRBP/Ku p70 corresponds to the mutagen-sensitive mus309 gene and is involved in P-element excision in vivo

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12 December 2020

The AAA+ ClpX machine unfolds a keystone subunit to remodel the Mu transpososome.

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12 December 2020

Watching DNA polymerase η make a phosphodiester bond

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12 December 2020

A proposed mechanism for IS607-family serine transposases

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12 December 2020

Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: insights from phosphorothioate stereoselectivity

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12 December 2020

DNA-binding activity and subunit interaction of the mariner transposase

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12 December 2020

A symmetrical six-base-pair target site sequence determines Tn10 insertion specificity

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12 December 2020

A general two-metal-ion mechanism for catalytic RNA

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12 December 2020

Mu transpososome architecture ensures that unfolding by ClpX or proteolysis by ClpXP remodels but does not destroy the complex

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12 December 2020

Structural insights into the retroviral DNA integration apparatus.

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12 December 2020

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

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12 December 2020

The Mu transpososome structure sheds light on DDE recombinase evolution

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12 December 2020

The Tn10 synaptic complex can capture a target DNA only after transposon excision

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12 December 2020

Tn7: smarter than we thought

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12 December 2020

Comparative analysis of the recently discovered hAT transposon TcBuster in human cells

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12 December 2020

Analysis of P element transposase protein-DNA interactions during the early stages of transposition

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12 December 2020

The outs and ins of transposition: from mu to kangaroo

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12 December 2020

Transposable element ISHp608 of Helicobacter pylori: nonrandom geographic distribution, functional organization, and insertion specificity

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12 December 2020

Insertion site preferences of the P transposable element in Drosophila melanogaster

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12 December 2020

Analysis of the N-terminal DNA binding domain of the IS30 transposase

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12 December 2020

H-NS mediates the dissociation of a refractory protein-DNA complex during Tn10/IS10 transposition.

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12 December 2020

Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integration

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12 December 2020

A modular master on the move: the Tn916 family of mobile genetic elements.

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12 December 2020

Mechanism of IS200/IS605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection

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12 December 2020

Bacteriophage Mu targets the trinucleotide sequence CGG.

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12 December 2020

Three-dimensional structure of the Tn5 synaptic complex transposition intermediate

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12 December 2020

Systematic sequencing of cDNA clones using the transposon Tn5

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12 December 2020

Calcium inhibition of ribonuclease H1 two-metal ion catalysis

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12 December 2020

Catalytic mechanism of RNA backbone cleavage by ribonuclease H from quantum mechanics/molecular mechanics simulations

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12 December 2020

Role of non-homologous end joining in V(D)J recombination

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12 December 2020

Atypical association of DDE transposition with conjugation specifies a new family of mobile elements.

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12 December 2020

The emerging diversity of transpososome architectures.

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12 December 2020

A bifunctional DNA binding region in Tn5 transposase

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12 December 2020

Molecular genetics of the chloramphenicol-resistance transposon Tn4451 from Clostridium perfringens: the TnpX site-specific recombinase excises a circular transposon molecule

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12 December 2020

Treasures in the attic: rolling circle transposons discovered in eukaryotic genomes

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12 December 2020

Structural unity among viral origin binding proteins: crystal structure of the nuclease domain of adeno-associated virus Rep

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12 December 2020

Avoiding self: two Tn7-encoded proteins mediate target immunity in Tn7 transposition

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12 December 2020

The polychromatic Helitron landscape of the maize genome

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12 December 2020

Transposase makes critical contacts with, and is stimulated by, single-stranded DNA at the P element termini in vitro

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12 December 2020

Site-specific recombination by phiC31 integrase and other large serine recombinases.

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12 December 2020

Structuring the bacterial genome: Y1-transposases associated with REP-BIME sequences.

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12 December 2020

The conjugative transposon Tn5397 has a strong preference for integration into its Clostridium difficile target site

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12 December 2020

Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells

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12 December 2020

Integrating prokaryotes and eukaryotes: DNA transposases in light of structure.

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12 December 2020

Transposition into replicating DNA occurs through interaction with the processivity factor

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12 December 2020

Inversion of the phosphate chirality at the target site of Mu DNA strand transfer: Evidence for a one-step transesterification mechanism

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12 December 2020

New insight into site-specific recombination from Flp recombinase-DNA structures

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12 December 2020

Excision of the Drosophila mariner transposon Mos1. Comparison with bacterial transposition and V(D)J recombination

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12 December 2020

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12 December 2020

Mechanisms of site-specific recombination.

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12 December 2020

The Mu story: how a maverick phage moved the field forward

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12 December 2020

Transposition of hAT elements links transposable elements and V(D)J recombination.

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12 December 2020

Target immunity of Mu transposition reflects a differential distribution of Mu B protein

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12 December 2020

Structural Insights into Single-Stranded DNA Binding and Cleavage by F Factor TraI

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12 December 2020

ClpX protein of Escherichia coli activates bacteriophage Mu transposase in the strand transfer complex for initiation of Mu DNA synthesis

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12 December 2020

Testing the palindromic target site model for DNA transposon insertion using the Drosophila melanogaster P-element

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12 December 2020

Common physical properties of DNA affecting target site selection of sleeping beauty and other Tc1/mariner transposable elements.

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12 December 2020

Breaking and joining single-stranded DNA: the HUH endonuclease superfamily

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12 December 2020

Regulation of CTnDOT conjugative transfer is a complex and highly coordinated series of events

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12 December 2020

Target immunity during Mu DNA transposition. Transpososome assembly and DNA looping enhance MuA-mediated disassembly of the MuB target complex

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12 December 2020

Hairpin opening and overhang processing by an Artemis/DNA-dependent protein kinase complex in nonhomologous end joining and V(D)J recombination

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12 December 2020

The DNA-bending protein HMGB1 is a cellular cofactor of Sleeping Beauty transposition

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12 December 2020

Molecular organization in site-specific recombination: the catalytic domain of bacteriophage HP1 integrase at 2.7 A resolution

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12 December 2020

The BED finger, a novel DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

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12 December 2020

HIV-1 DNA integration: Mechanism of viral DNA cleavage and DNA strand transfer

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12 December 2020

Differential roles of the transposon termini in IS91 transposition

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12 December 2020

Requirement of IS911 replication before integration defines a new bacterial transposition pathway

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12 December 2020

Transposon Tn7 protein TnsD binding to Escherichia coli attTn7 DNA and its eukaryotic orthologs

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12 December 2020

Tn7 transposition: recognition of the attTn7 target sequence

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12 December 2020

Unveiling the molecular mechanism of a conjugative relaxase: The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site.

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12 December 2020

Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC

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12 December 2020

Novel sequence organization and insertion specificity of IS605 and IS606: chimaeric transposable elements of Helicobacter pylori

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12 December 2020

Structural Basis of hAT Transposon End Recognition by Hermes, an Octameric DNA Transposase from Musca domestica

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12 December 2020

Transpositional recombination: mechanistic insights from studies of mu and other elements

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12 December 2020

Mechanism of Mos1 transposition: insights from structural analysis

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12 December 2020

Moving DNA around: DNA transposition and retroviral integration

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12 December 2020

Tn7 transposition: target DNA recognition is mediated by multiple Tn7-encoded proteins in a purified in vitro system

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12 December 2020

Challenging a paradigm: the role of DNA homology in tyrosine recombinase reactions.

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12 December 2020

Solution conformations of early intermediates in Mos1 transposition

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12 December 2020

Structural analysis of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA.

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12 December 2020

The crystal structure of the catalytic domain of the site-specific recombination enzyme gamma delta resolvase at 2.7 A resolution

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12 December 2020

Ku-mediated coupling of DNA cleavage and repair during programmed genome rearrangements in the ciliate Paramecium tetraurelia.

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12 December 2020

The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies

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12 December 2020

The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries

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12 December 2020

Tn7 transposition creates a hotspot for homologous recombination at the transposon donor site

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12 December 2020

Sequence organization and insertion specificity of the novel chimeric ISHp609 transposable element of Helicobacter pylori.

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12 December 2020

Mutagenesis via IS transposition in Deinococcus radiodurans

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12 December 2020

DNA transposons and the evolution of eukaryotic genomes

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12 December 2020

Requirements for catalysis in the Cre recombinase active site

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12 December 2020

A new component of bacteriophage Mu replicative transposition machinery: the Escherichia coli ClpX protein.

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12 December 2020

Harnessing transposons for cancer gene discovery

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12 December 2020

Structure/function insights into Tn5 transposition.

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12 December 2020

Retroviral intasome assembly and inhibition of DNA strand transfer

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12 December 2020

3′-Processing and strand transfer catalysed by retroviral integrasein crystallo

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12 December 2020

The global bacterial regulator H-NS promotes transpososome formation and transposition in the Tn5 system

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12 December 2020

Computer-assisted dissection of rolling circle DNA replication

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12 December 2020

Formation of a nucleoprotein complex containing Tn7 and its target DNA regulates transposition initiation

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12 December 2020

Emerging potential of transposons for gene therapy and generation of induced pluripotent stem cells

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12 December 2020

Cooperative recruitment of HMGB1 during V(D)J recombination through interactions with RAG1 and DNA.

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12 December 2020

ISCR elements: novel gene-capturing systems of the 21st century?

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12 December 2020

Nucleases: diversity of structure, function and mechanism.

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12 December 2020

The processing of repetitive extragenic palindromes: the structure of a repetitive extragenic palindrome bound to its associated nuclease

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12 December 2020

IHF modulation of Tn10 transposition: sensory transduction of supercoiling status via a proposed protein/DNA molecular spring

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12 December 2020

The three chemical steps of Tn10/IS10 transposition involve repeated utilization of a single active site

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12 December 2020

Distribution of IS91 family insertion sequences in bacterial genomes: evolutionary implications

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12 December 2020

DNA sequence requirements for hobo transposable element transposition in Drosophila melanogaster

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12 December 2020

The wild-type conformation of the Mos-1 inverted terminal repeats is suboptimal for transposition in bacteria

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12 December 2020

Assembly of a strong promoter following IS911 circularization and the role of circles in transposition

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12 December 2020

An in vivo transposase-catalyzed single-stranded DNA circularization reaction

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12 December 2020

Structural domains of IS10 transposase and reconstitution of transposition activity from proteolytic fragments lacking an interdomain linker

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12 December 2020

Target DNA structure plays a critical role in Tn7 transposition

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12 December 2020

A minimal system for Tn7 transposition: the transposon-encoded proteins TnsA and TnsB can execute DNA breakage and joining reactions that generate circularized Tn7 species

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12 December 2020

Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus

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12 December 2020

Architecture of the Tn7 posttransposition complex: an elaborate nucleoprotein structure

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12 December 2020

Single-stranded DNA transposition is coupled to host replication.

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12 December 2020

Structural Basis for Catalytic Activation of a Serine Recombinase

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12 December 2020

Gene therapy vectors: the prospects and potentials of the cut-and-paste transposons

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12 December 2020

Insertion site specificity of the transposon Tn3.

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12 December 2020

Diversity in the serine recombinases

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12 December 2020

Unexpected structural diversity in DNA recombination: the restriction endonuclease connection

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12 December 2020

Transposition of the human Hsmar1 transposon: rate-limiting steps and the importance of the flanking TA dinucleotide in second strand cleavage.

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12 December 2020

Crystal structures of RNase H bound to an RNA/DNA hybrid: substrate specificity and metal-dependent catalysis

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12 December 2020

Transposition of Tn4451 and Tn4453 involves a circular intermediate that forms a promoter for the large resolvase, TnpX.

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12 December 2020

Direct interaction between the TnsA and TnsB subunits controls the heteromeric Tn7 transposase

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12 December 2020

The helix-turn-helix motif of bacterial insertion sequence IS911 transposase is required for DNA binding

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12 December 2020

Functional characterization of the Tn5 transposase by limited proteolysis

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12 December 2020

Integration profiling of gene function with dense maps of transposon integration

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12 December 2020

Active site sharing and subterminal hairpin recognition in a new class of DNA transposases

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12 December 2020

Molecular Architecture of the Mos1 Paired-End Complex: The Structural Basis of DNA Transposition in a Eukaryote

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12 December 2020

Interaction of the Tn7-encoded transposition protein TnsB with the ends of the transposon

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12 December 2020

piggyBac can bypass DNA synthesis during cut and paste transposition

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12 December 2020

The many faces of the helix-turn-helix domain: transcription regulation and beyond

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12 December 2020

Duplex opening by primosome protein PriA for replisome assembly on a recombination intermediate

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12 December 2020

Arginine as a general acid catalyst in serine recombinase-mediated DNA cleavage

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12 December 2020

Autoregulation of mariner transposase activity by overproduction and dominant-negative complementation.

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12 December 2020

Mu insertions are repaired by the double-strand break repair pathway of Escherichia coli

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12 December 2020

Tn7 transposes proximal to DNA double-strand breaks and into regions where chromosomal DNA replication terminates

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12 December 2020

A hyperactive piggyBac transposase for mammalian applications

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12 December 2020

Reconstitution of a functional IS608 single-strand transpososome: role of non-canonical base pairing

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12 December 2020

Cleavage at a V(D)J recombination signal requires only RAG1 and RAG2 proteins and occurs in two steps

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12 December 2020

Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome

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12 December 2020

Retroviral integrase superfamily: the structural perspective

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12 December 2020

Resetting the site: redirecting integration of an insertion sequence in a predictable way.

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12 December 2020

Transposition of ISHp608, member of an unusual family of bacterial insertion sequences

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12 December 2020

In vitro reconstitution of a single-stranded transposition mechanism of IS608.

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12 December 2020

Flexibility in DNA recombination: structure of the lambda integrase catalytic core

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12 December 2020

Functional organization and insertion specificity of IS607, a chimeric element of Helicobacter pylori

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12 December 2020

DNA recognition and the precleavage state during single-stranded DNA transposition in D. radiodurans

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12 December 2020

Playing second fiddle: second-strand processing and liberation of transposable elements from donor DNA.

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12 December 2020

Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster

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12 December 2020

Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

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12 December 2020

Translation factor IF2 at the interface of transposition and replication by the PriA-PriC pathway.

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12 December 2020

Separate structural and functional domains of Tn4430 transposase contribute to target immunity

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12 December 2020

10.1128/MICROBIOLSPEC.MDNA3-0034-2014

Identifiers

DOI

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3 September 2017

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