An integrated expression atlas of miRNAs and their promoters in human and mouse. (Q38614360)

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28 March 2020

title

An integrated expression atlas of miRNAs and their promoters in human and mouse (English)

1 reference

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28 March 2020

2

1 reference

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28 March 2020

Magda Babina

8

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28 March 2020

Nicolas Bertin

9

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28 March 2020

Carsten O Daub

12

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28 March 2020

Vsevolod Makeev

36

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Anthony Mathelier

37

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Yulia Medvedeva

38

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28 March 2020

Pål Sætrom

47

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Hideya Kawaji

64

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Michael Detmar

13

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Ruslan Deviatiiarov

14

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20

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Peter Heutink

24

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Kim M Summers

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Peter Arner

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Yuri Ishizu

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Patrizia Rizzu

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Haitham Ashoor

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Gaby Åström

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A Maxwell Burroughs

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Alexandre Fort

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Claudia Gebhard

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Daniel Goldowitz

17

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Sven Guhl

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Thomas J Ha

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Akira Hasegawa

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Kosuke Hashimoto

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Charles-Henri Lecellier

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Niklas Mejhert

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Mitsuhiro Ohshima

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Hiroshi Tarui

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Hiroo Toyoda

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Yoko Yamaguchi

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Misako Yoneda

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Noriko Yumoto

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Susan Zabierowski

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Peter G Zhang

61

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28 March 2020

FANTOM Consortium

67

1 reference

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28 March 2020

Michiel J L de Hoon

71

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28 March 2020

Tanvir Alam

3

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28 March 2020

Meenhard Herlyn

23

1 reference

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28 March 2020

Kristoffer Vitting-Seerup

54

1 reference

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28 March 2020

publication date

21 August 2017

1 reference

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28 March 2020

number of pages

7

0 references

published in

Nature Biotechnology

1 reference

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28 March 2020

volume

35

1 reference

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28 March 2020

issue

9

1 reference

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28 March 2020

page(s)

872-878

1 reference

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https://scigraph.springernature.com/pub.10.1038/nbt.3947

28 March 2020

exact match

0 references

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Site-specific DICER and DROSHA RNA products control the DNA-damage response

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

MicroRNA profiling: approaches and considerations

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

MicroRNAs in stress signaling and human disease

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

23 June 2018

ViennaRNA Package 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Mirtrons: microRNA biogenesis via splicing

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Unamplified cap analysis of gene expression on a single-molecule sequencer.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Logical development of the cell ontology

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Differential expression analysis for sequence count data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

TagDust--a program to eliminate artifacts from next generation sequencing data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Fast and accurate short read alignment with Burrows-Wheeler transform

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Construction, visualisation, and clustering of transcription networks from microarray expression data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

A mammalian microRNA expression atlas based on small RNA library sequencing

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

RNA maps reveal new RNA classes and a possible function for pervasive transcription

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

The transcriptional landscape of the mammalian genome

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

MicroRNAs: genomics, biogenesis, mechanism, and function

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

BLAT—The BLAST-Like Alignment Tool

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

T-Coffee: A novel method for fast and accurate multiple sequence alignment

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Roles for noncoding RNAs in cell-fate determination and regeneration

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

miR-153 supports colorectal cancer progression via pleiotropic effects that enhance invasion and chemotherapeutic resistance

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

miR-200b and miR-429 function in mouse ovulation and are essential for female fertility.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Mincle polarizes human monocyte and neutrophil responses to Candida albicans.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Tiny RNAs associated with transcription start sites in animals.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

3 December 2018

Identifiers

DOI

10.1038/NBT.3947

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference