Gene regulation in the immune system by long noncoding RNAs. (Q38638798)

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28 March 2020

title

Gene regulation in the immune system by long noncoding RNAs (English)

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28 March 2020

2

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28 March 2020

author name string

Y Grace Chen

series ordinal

1

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28 March 2020

Howard Y Chang

series ordinal

3

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language of work or name

English

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publication date

1 August 2017

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28 March 2020

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28 March 2020

volume

18

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28 March 2020

issue

9

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28 March 2020

page(s)

962-972

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Large-scale transcriptional activity in chromosomes 21 and 22

28 March 2020

cites work

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The transcriptional activity of human Chromosome 22

21 January 2018

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Landscape of transcription in human cells

21 January 2018

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The landscape of long noncoding RNAs in the human transcriptome

21 January 2018

1 reference

Discovery and annotation of long noncoding RNAs

21 January 2018

1 reference

Genome regulation by long noncoding RNAs.

21 January 2018

1 reference

Noncoding transcription at enhancers: general principles and functional models

21 January 2018

1 reference

Natural RNA circles function as efficient microRNA sponges

21 January 2018

1 reference

Circular RNAs are a large class of animal RNAs with regulatory potency

21 January 2018

1 reference

Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types

21 January 2018

1 reference

Circular RNAs are abundant, conserved, and associated with ALU repeats

21 January 2018

1 reference

Expanded identification and characterization of mammalian circular RNAs

21 January 2018

1 reference

The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus

21 January 2018

1 reference

XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure

21 January 2018

1 reference

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

21 January 2018

1 reference

Disruption of imprinting caused by deletion of the H19 gene region in mice

21 January 2018

1 reference

H19 lncRNA controls gene expression of the Imprinted Gene Network by recruiting MBD1.

21 January 2018

1 reference

Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal

21 January 2018

1 reference

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

21 January 2018

1 reference

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

21 January 2018

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

21 January 2018

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Long noncoding RNAs in cell-fate programming and reprogramming

21 January 2018

1 reference

X-inactivation, imprinting, and long noncoding RNAs in health and disease

21 January 2018

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Long intergenic noncoding RNAs: new links in cancer progression

21 January 2018

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Molecular mechanisms of long noncoding RNAs

21 January 2018

1 reference

Modular regulatory principles of large non-coding RNAs

21 January 2018

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Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference

21 January 2018

1 reference

Local regulation of gene expression by lncRNA promoters, transcription and splicing.

21 January 2018

1 reference

Transcription factor trapping by RNA in gene regulatory elements

21 January 2018

1 reference

RNA-DNA Triplex Formation by Long Noncoding RNAs.

21 January 2018

1 reference

Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

21 January 2018

1 reference

Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes

21 January 2018

1 reference

EBV noncoding RNA binds nascent RNA to drive host PAX5 to viral DNA.

21 January 2018

1 reference

Long noncoding RNA as modular scaffold of histone modification complexes

21 January 2018

1 reference

Non-coding RNAs as direct and indirect modulators of epigenetic regulation

21 January 2018

1 reference

Systematic discovery of Xist RNA binding proteins

21 January 2018

1 reference

Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation

21 January 2018

1 reference

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

21 January 2018

1 reference

LincRNA-p21 activates p21 in cis to promote Polycomb target gene expression and to enforce the G1/S checkpoint

21 January 2018

1 reference

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

21 January 2018

1 reference

A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics

21 January 2018

1 reference

Exon-intron circular RNAs regulate transcription in the nucleus.

21 January 2018

1 reference

circRNA biogenesis competes with pre-mRNA splicing.

21 January 2018

1 reference

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

21 January 2018

1 reference

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

21 January 2018

1 reference

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

21 January 2018

1 reference

Targeted disruption of Hotair leads to homeotic transformation and gene derepression

21 January 2018

1 reference

Control of somatic tissue differentiation by the long non-coding RNA TINCR.

21 January 2018

1 reference

lincRNAs act in the circuitry controlling pluripotency and differentiation

21 January 2018

1 reference

Circular RNA is expressed across the eukaryotic tree of life

21 January 2018

1 reference

Short intronic repeat sequences facilitate circular RNA production

21 January 2018

1 reference

Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation

21 January 2018

1 reference

The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4.

21 January 2018

1 reference

Maternal imprinting at the H19-Igf2 locus maintains adult haematopoietic stem cell quiescence.

21 January 2018

1 reference

Long non-coding RNAs control hematopoietic stem cell function

21 January 2018

1 reference

Re(de)fining the dendritic cell lineage.

21 January 2018

1 reference

The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan.

21 January 2018

1 reference

Expression and functions of long noncoding RNAs during human T helper cell differentiation.

21 January 2018

1 reference

DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions

21 January 2018

1 reference

Evolutionary comparison provides evidence for pathogenicity of RMRP mutations

21 January 2018

1 reference

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

21 January 2018

1 reference

A long noncoding RNA mediates both activation and repression of immune response genes

21 January 2018

1 reference

The hnRNP family: insights into their role in health and disease

21 January 2018

1 reference

The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL.

21 January 2018

1 reference

p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes

21 January 2018

1 reference

Cyclooxygenases: structural, cellular, and molecular biology

21 January 2018

1 reference

Jpx RNA activates Xist by evicting CTCF.

21 January 2018

1 reference

Rad52, Maestro of Inverse Strand Exchange

21 January 2018

1 reference

Inducible RasGEF1B circular RNA is a positive regulator of ICAM-1 in the TLR4/LPS pathway

21 January 2018

1 reference

A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation

21 January 2018

1 reference

A long noncoding RNA associated with susceptibility to celiac disease

21 January 2018

1 reference

A cytoplasmic NF-κB interacting long noncoding RNA blocks IκB phosphorylation and suppresses breast cancer metastasis

21 January 2018

1 reference

The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus

21 January 2018

1 reference

The genetics of the persistent infection and demyelinating disease caused by Theiler's virus

21 January 2018

1 reference

Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15.

21 January 2018

1 reference

Tmevpg1, a candidate gene for the control of Theiler's virus persistence, could be implicated in the regulation of gamma interferon.

21 January 2018

1 reference

Mapping loci influencing the persistence of Theiler's virus in the murine central nervous system

21 January 2018

1 reference

Interleukin 22 is a candidate gene for Tmevp3, a locus controlling Theiler's virus-induced neurological diseases

21 January 2018

1 reference

Cutting edge: influence of Tmevpg1, a long intergenic noncoding RNA, on the expression of Ifng by Th1 cells

21 January 2018

1 reference

Regulation of the Th1 genomic locus from Ifng through Tmevpg1 by T-bet

21 January 2018

1 reference

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

21 January 2018

1 reference

Dephosphorylation of the nuclear factor of activated T cells (NFAT) transcription factor is regulated by an RNA-protein scaffold complex

21 January 2018

1 reference

The kinase LRRK2 is a regulator of the transcription factor NFAT that modulates the severity of inflammatory bowel disease

21 January 2018

1 reference

Long noncoding RNA derived from CD244 signaling epigenetically controls CD8+ T-cell immune responses in tuberculosis infection

21 January 2018

1 reference

MODOMICS: a database of RNA modification pathways

21 January 2018

1 reference

Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons

21 January 2018

1 reference

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

21 January 2018

1 reference

Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA

21 January 2018

1 reference

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

21 January 2018

1 reference

Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.

21 January 2018

1 reference

LNCediting: a database for functional effects of RNA editing in lncRNAs

21 January 2018

1 reference

Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA.

21 January 2018

1 reference

Profiling RNA editing in human tissues: towards the inosinome Atlas

21 January 2018

1 reference

ADAR1 is vital for B cell lineage development in the mouse bone marrow

21 January 2018

1 reference

A-to-I RNA editing promotes developmental stage-specific gene and lncRNA expression

21 January 2018

1 reference

Summary: the modified nucleosides of RNA.

21 January 2018

1 reference

Recent advances in dynamic m6A RNA modification

21 January 2018

1 reference

m(6)A RNA methylation promotes XIST-mediated transcriptional repression

21 January 2018

1 reference

m6A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition

21 January 2018

1 reference

Uncovering RNA Editing Sites in Long Non-Coding RNAs.

21 January 2018

1 reference

Systematic identification of abundant A-to-I editing sites in the human transcriptome

21 January 2018

1 reference

RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself

21 January 2018

1 reference

RADAR: a rigorously annotated database of A-to-I RNA editing

21 January 2018

1 reference

CRM1 mediates the export of ADAR1 through a nuclear export signal within the Z-DNA binding domain

21 January 2018

1 reference

The human but not the Xenopus RNA-editing enzyme ADAR1 has an atypical nuclear localization signal and displays the characteristics of a shuttling protein

21 January 2018

1 reference

Subcellular distribution of ADAR1 isoforms is synergistically determined by three nuclear discrimination signals and a regulatory motif

21 January 2018

1 reference

Dynamic association of RNA-editing enzymes with the nucleolus

21 January 2018

1 reference

ADARs: allies or enemies? The importance of A-to-I RNA editing in human disease: from cancer to HIV-1.

21 January 2018

1 reference

Deregulation of the A-to-I RNA editing mechanism in psychiatric disorders

21 January 2018

1 reference

Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis

21 January 2018

1 reference

Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2

21 January 2018

1 reference

The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers

21 January 2018

1 reference

Principles Governing A-to-I RNA Editing in the Breast Cancer Transcriptome.

21 January 2018

1 reference

PRUNE2 is a human prostate cancer suppressor regulated by the intronic long noncoding RNA PCA3.

21 January 2018

1 reference

Autoimmune disorders associated with gain of function of the intracellular sensor MDA5.

21 January 2018

1 reference

The RNA-editing enzyme ADAR1 controls innate immune responses to RNA.

21 January 2018

1 reference

The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression

21 January 2018

1 reference

Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals

21 January 2018

1 reference

Repetitive elements regulate circular RNA biogenesis

21 January 2018

1 reference

Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome

21 January 2018

1 reference

Functions and regulation of RNA editing by ADAR deaminases

21 January 2018

1 reference

Accurate identification of human Alu and non-Alu RNA editing sites

21 January 2018

1 reference

Circular RNAs are down-regulated in KRAS mutant colon cancer cells and can be transferred to exosomes.

21 January 2018

1 reference

RNA nucleotide methylation

21 January 2018

1 reference

Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation

21 January 2018

1 reference

Role of RNA methyltransferases in tissue renewal and pathology

21 January 2018

1 reference

m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells

21 January 2018

1 reference

Dynamic RNA modifications in disease

21 January 2018

1 reference

N6-methyladenosine-dependent regulation of messenger RNA stability

21 January 2018

1 reference

N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions

21 January 2018

1 reference

FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis

21 January 2018

1 reference

5' UTR m(6)A Promotes Cap-Independent Translation

21 January 2018

1 reference

ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility

21 January 2018

1 reference

Structural imprints in vivo decode RNA regulatory mechanisms

21 January 2018

1 reference

Structure and thermodynamics of N6-methyladenosine in RNA: a spring-loaded base modification

21 January 2018

1 reference

Suppression of RNA recognition by Toll-like receptors: the impact of nucleoside modification and the evolutionary origin of RNA

21 January 2018

1 reference

Innate antiviral responses by means of TLR7-mediated recognition of single-stranded RNA

21 January 2018

1 reference

Toll-like receptor and RIG-I-like receptor signaling

21 January 2018

1 reference

Extensive translation of circular RNAs driven by N6-methyladenosine

21 January 2018

1 reference

Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis

21 January 2018

1 reference

Genome-wide analysis of long noncoding RNA stability

21 January 2018

1 reference

The dynamic landscapes of RNA architecture

21 January 2018

1 reference

7 January 2021

Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing

1 reference

7 January 2021

The STAT3-Binding Long Noncoding RNA lnc-DC Controls Human Dendritic Cell Differentiation

1 reference

7 January 2021

Non-human lnc-DC orthologs encode Wdnm1-like protein

1 reference

7 January 2021

Susceptibility to infections and in vitro immune functions in cartilage-hair hypoplasia

1 reference

7 January 2021

Elevated RNA Editing Activity Is a Major Contributor to Transcriptomic Diversity in Tumors

1 reference

7 January 2021

An in vitro system for accurate methylation of internal adenosine residues in messenger RNA

1 reference

7 January 2021

Two loci, Tmevp2 and Tmevp3, located on the telomeric region of chromosome 10, control the persistence of Theiler's virus in the central nervous system of mice

1 reference

12 December 2020

Sensing Self and Foreign Circular RNAs by Intron Identity.

1 reference

12 December 2020

A standardized nomenclature for adenosine deaminases that act on RNA.

1 reference

12 December 2020

Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase

1 reference

12 December 2020

Characterization and partial purification of mRNA N6-adenosine methyltransferase from HeLa cell nuclei. Internal mRNA methylation requires a multisubunit complex

1 reference

12 December 2020

Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor

1 reference

12 December 2020

Identifiers

DOI

10.1038/NI.3771

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829444%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

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