The Impact of Mass Spectrometry-Based Proteomics on Fundamental Discoveries in Virology. (Q38766628)

PubMed publication ID

26958735

6 September 2017

title

The Impact of Mass Spectrometry-Based Proteomics on Fundamental Discoveries in Virology (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

13 May 2020

0 references

Todd M Greco

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

13 May 2020

Benjamin A Diner

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

13 May 2020

Ileana M Cristea

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

13 May 2020

language of work or name

1 reference

14 July 2014

1 reference

PubMed publication ID

26958735

Annual Review of Virology

6 September 2017

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

13 May 2020

volume

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

13 May 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

13 May 2020

page(s)

581-604

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

Proteomic analysis of HIV-1 Nef cellular binding partners reveals a role for exocyst complex proteins in mediating enhancement of intercellular nanotube formation

13 May 2020

cites work

1 reference

12 December 2020

Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions

1 reference

12 December 2020

Identification of host factors involved in coronavirus replication by quantitative proteomics analysis

1 reference

12 December 2020

Profiling of the kinome of cytomegalovirus-infected cells reveals the functional importance of host kinases Aurora A, ABL and AMPK.

1 reference

12 December 2020

Identification of replication-competent HSV-1 Cgal+ strain signaling targets in human hepatoma cells by functional organelle proteomics.

1 reference

12 December 2020

Proteomics of herpes simplex virus infected cell protein 27: association with translation initiation factors

1 reference

12 December 2020

Analyzing protein-protein interaction networks

1 reference

12 December 2020

Thiouracil cross-linking mass spectrometry: a cell-based method to identify host factors involved in viral amplification

1 reference

12 December 2020

Kaposi's sarcoma-associated herpesvirus utilizes an actin polymerization-dependent macropinocytic pathway to enter human dermal microvascular endothelial and human umbilical vein endothelial cells

1 reference

12 December 2020

Proteomics analysis of the nucleolus in adenovirus-infected cells

1 reference

12 December 2020

Proteomics of herpes simplex virus replication compartments: association of cellular DNA replication, repair, recombination, and chromatin remodeling proteins with ICP8.

1 reference

12 December 2020

Interrogating viral capsid assembly with ion mobility-mass spectrometry

1 reference

12 December 2020

Characterization of phosphoproteins and protein kinase activity of virions, noninfectious enveloped particles, and dense bodies of human cytomegalovirus

1 reference

12 December 2020

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

1 reference

12 December 2020

Role for Influenza Virus Envelope Cholesterol in Virus Entry and Infection

1 reference

12 December 2020

Tracking and elucidating alphavirus-host protein interactions

1 reference

12 December 2020

GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data

1 reference

12 December 2020

IFI16 is an innate immune sensor for intracellular DNA

1 reference

12 December 2020

Latency-associated degradation of the MRP1 drug transporter during latent human cytomegalovirus infection

1 reference

12 December 2020

The Reactome pathway knowledgebase

1 reference

12 December 2020

Proteomic characterization of murid herpesvirus 4 extracellular virions

1 reference

12 December 2020

A targeted spatial-temporal proteomics approach implicates multiple cellular trafficking pathways in human cytomegalovirus virion maturation

1 reference

12 December 2020

Using ion mobility spectrometry-mass spectrometry to decipher the conformational and assembly characteristics of the hepatitis B capsid protein

1 reference

12 December 2020

GeneMANIA prediction server 2013 update

1 reference

12 December 2020

Norwalk virus assembly and stability monitored by mass spectrometry.

1 reference

12 December 2020

Physical analysis of virus particles using electrospray differential mobility analysis

1 reference

12 December 2020

Global landscape of HIV-human protein complexes

1 reference

12 December 2020

Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques

1 reference

12 December 2020

Quantitative proteomics using SILAC coupled to LC-MS/MS reveals changes in the nucleolar proteome in influenza A virus-infected cells

1 reference

12 December 2020

Human cytomegalovirus tegument protein pUL83 inhibits IFI16-mediated DNA sensing for immune evasion

1 reference

12 December 2020

What is the total number of protein molecules per cell volume? A call to rethink some published values

1 reference

12 December 2020

Mouse cytomegalovirus egress protein pM50 interacts with cellular endophilin-A2

1 reference

12 December 2020

Evidence for a genetic and physical interaction between nonstructural proteins NS1 and NS4B that modulates replication of West Nile virus

1 reference

12 December 2020

Inactivation and disassembly of the anaphase-promoting complex during human cytomegalovirus infection is associated with degradation of the APC5 and APC4 subunits and does not require UL97-mediated phosphorylation of Cdh1.

1 reference

12 December 2020

Mouse cytomegalovirus antigenic immune stimulation is sufficient to aggravate atherosclerosis in hypercholesterolemic mice

1 reference

12 December 2020

Histone deacetylases in herpesvirus replication and virus-stimulated host defense

1 reference

12 December 2020

Pox proteomics: mass spectrometry analysis and identification of Vaccinia virion proteins.

1 reference

12 December 2020

A proteomic study of TAR-RNA binding protein (TRBP)-associated factors

1 reference

12 December 2020

Ebola virus matrix protein VP40 uses the COPII transport system for its intracellular transport

1 reference

12 December 2020

Global secretome characterization of herpes simplex virus 1-infected human primary macrophages.

1 reference

12 December 2020

Atomic force microscopy in imaging of viruses and virus-infected cells

1 reference

12 December 2020

Virus-host protein interactions in RNA viruses

1 reference

12 December 2020

Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions

1 reference

12 December 2020

Thermodynamic origins of protein folding, allostery, and capsid formation in the human hepatitis B virus core protein

1 reference

12 December 2020

Building protein-protein interaction networks with proteomics and informatics tools.

1 reference

12 December 2020

Differential effects of selective HDAC inhibitors on macrophage inflammatory responses to the Toll-like receptor 4 agonist LPS.

1 reference

12 December 2020

Proteins of purified Epstein-Barr virus

1 reference

12 December 2020

Nuclear IFI16 induction of IRF-3 signaling during herpesviral infection and degradation of IFI16 by the viral ICP0 protein

1 reference

12 December 2020

Defining the human deubiquitinating enzyme interaction landscape

1 reference

12 December 2020

Analysis of virion-incorporated host proteins required for herpes simplex virus type 1 infection through a RNA interference screen

1 reference

12 December 2020

Human cytomegalovirus pUL83 stimulates activity of the viral immediate-early promoter through its interaction with the cellular IFI16 protein.

1 reference

12 December 2020

Comprehensive characterization of extracellular herpes simplex virus type 1 virions

1 reference

12 December 2020

IFI16 acts as a nuclear pathogen sensor to induce the inflammasome in response to Kaposi Sarcoma-associated herpesvirus infection

1 reference

12 December 2020

Identifying the membrane proteome of HIV-1 latently infected cells

1 reference

12 December 2020

Virion-associated cholesterol is critical for the maintenance of HIV-1 structure and infectivity.

1 reference

12 December 2020

Identification of human cytomegalovirus UL84 virus- and cell-encoded binding partners by using proteomics analysis

1 reference

12 December 2020

Chemistry-based functional proteomics reveals novel members of the deubiquitinating enzyme family

1 reference

12 December 2020

Investigating the human immunodeficiency virus type 1-infected monocyte-derived macrophage secretome

1 reference

12 December 2020

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

1 reference

12 December 2020

Increased expression of LDL receptor-related protein 1 during human cytomegalovirus infection reduces virion cholesterol and infectivity

1 reference

12 December 2020

Expression profiling of lymphocyte plasma membrane proteins

1 reference

12 December 2020

Human cytomegalovirus secretome contains factors that induce angiogenesis and wound healing

1 reference

12 December 2020

Lysine acetylation targets protein complexes and co-regulates major cellular functions

1 reference

12 December 2020

The AIM2 inflammasome is essential for host defense against cytosolic bacteria and DNA viruses

1 reference

12 December 2020

Hydrogen-deuterium exchange as a probe of folding and assembly in viral capsids

1 reference

12 December 2020

Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection

1 reference

12 December 2020

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

1 reference

12 December 2020

The IntAct molecular interaction database in 2010

1 reference

12 December 2020

Acetylation modulates cellular distribution and DNA sensing ability of interferon-inducible protein IFI16.

1 reference

12 December 2020

The human cytomegalovirus UL11 protein interacts with the receptor tyrosine phosphatase CD45, resulting in functional paralysis of T cells

1 reference

12 December 2020

Human cytomegalovirus protein UL38 inhibits host cell stress responses by antagonizing the tuberous sclerosis protein complex

1 reference

12 December 2020

Post translational modifications in adenovirus type 2.

1 reference

12 December 2020

Cellular proteins in influenza virus particles

1 reference

12 December 2020

Analysis of the interactions of viral and cellular factors with human cytomegalovirus lytic origin of replication, oriLyt

1 reference

12 December 2020

Identification of cellular factors associated with the 3'-nontranslated region of the hepatitis C virus genome

1 reference

12 December 2020

Quantitative subcellular proteome and secretome profiling of influenza A virus-infected human primary macrophages

1 reference

12 December 2020

Discovery of host-viral protein complexes during infection

1 reference

12 December 2020

Proteomic analysis of human immunodeficiency virus using liquid chromatography/tandem mass spectrometry effectively distinguishes specific incorporated host proteins

1 reference

12 December 2020

Proteomics analysis of herpes simplex virus type 1-infected cells reveals dynamic changes of viral protein expression, ubiquitylation, and phosphorylation

1 reference

12 December 2020

Histone deacetylase inhibitors impair antibacterial defenses of macrophages.

1 reference

12 December 2020

Affinity capture and identification of host cell factors associated with hepatitis C virus (+) strand subgenomic RNA

1 reference

12 December 2020

Ebola virus VP40 drives the formation of virus-like filamentous particles along with GP

1 reference

12 December 2020

Proteolytic 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus

1 reference

12 December 2020

Polyunsaturated liposomes are antiviral against hepatitis B and C viruses and HIV by decreasing cholesterol levels in infected cells

1 reference

12 December 2020

IFI16 senses DNA forms of the lentiviral replication cycle and controls HIV-1 replication.

1 reference

12 December 2020

Subproteomic analysis of the cellular proteins associated with the 3' untranslated region of the hepatitis C virus genome in human liver cells

1 reference

12 December 2020

Identification of essential filovirion-associated host factors by serial proteomic analysis and RNAi screen

1 reference

12 December 2020

Proteomic and biochemical analysis of purified human immunodeficiency virus type 1 produced from infected monocyte-derived macrophages

1 reference

12 December 2020

Involvement of the TIP60 histone acetylase complex in DNA repair and apoptosis

1 reference

12 December 2020

Quantitative proteomic analysis of A549 cells infected with human respiratory syncytial virus

1 reference

12 December 2020

The 3A protein from multiple picornaviruses utilizes the golgi adaptor protein ACBD3 to recruit PI4KIIIβ.

1 reference

12 December 2020

Human cytomegalovirus UL29/28 protein interacts with components of the NuRD complex which promote accumulation of immediate-early RNA

1 reference

12 December 2020

Identification of host proteins associated with HIV-1 preintegration complexes isolated from infected CD4+ cells

1 reference

12 December 2020

The cellular interactome of the coronavirus infectious bronchitis virus nucleocapsid protein and functional implications for virus biology

1 reference

12 December 2020

TULA proteins bind to ABCE-1, a host factor of HIV-1 assembly, and inhibit HIV-1 biogenesis in a UBA-dependent fashion.

1 reference

12 December 2020

Hydrogen/Deuterium Exchange Analysis of HIV-1 Capsid Assembly and Maturation

1 reference

12 December 2020

Cross-linking measurements of the Potato leafroll virus reveal protein interaction topologies required for virion stability, aphid transmission, and virus-plant interactions

1 reference

12 December 2020

Phosphorylation site mutations affect herpes simplex virus type 1 ICP0 function

1 reference

12 December 2020

The conserved set of host proteins incorporated into HIV-1 virions suggests a common egress pathway in multiple cell types

1 reference

12 December 2020

Interferons: signaling, antiviral and viral evasion

1 reference

12 December 2020

Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome

1 reference

12 December 2020

Identification of cellular interaction partners of the influenza virus ribonucleoprotein complex and polymerase complex using proteomic-based approaches

1 reference

12 December 2020

Human kinome profiling identifies a requirement for AMP-activated protein kinase during human cytomegalovirus infection

1 reference

12 December 2020

Activity-based ubiquitin-specific protease (USP) profiling of virus-infected and malignant human cells

1 reference

12 December 2020

Global analysis of modifications of the human BK virus structural proteins by LC-MS/MS.

1 reference

12 December 2020

The cancer cell secretome: a good source for discovering biomarkers?

1 reference

12 December 2020

EWI-2 association with α-actinin regulates T cell immune synapses and HIV viral infection.

1 reference

12 December 2020

The functional interactome landscape of the human histone deacetylase family

1 reference

12 December 2020

Hepatitis B virus core interacts with the host cell nucleolar protein, nucleophosmin 1.

1 reference

12 December 2020

Beyond hairballs: The use of quantitative mass spectrometry data to understand protein-protein interactions

1 reference

12 December 2020

Decoding human cytomegalovirus

1 reference

12 December 2020

Formation of nsP3-Specific Protein Complexes during Sindbis Virus Replication

1 reference

12 December 2020

Host cell proteins interacting with the 3' end of TGEV coronavirus genome influence virus replication.

1 reference

12 December 2020

Cytomegalovirus infection aggravates atherogenesis in apoE knockout mice by both local and systemic immune activation

1 reference

12 December 2020

Protein analysis of purified respiratory syncytial virus particles reveals an important role for heat shock protein 90 in virus particle assembly

1 reference

12 December 2020

Fluorescent proteins as proteomic probes.

1 reference

12 December 2020

Diminished matrix metalloproteinase 9 secretion in human immunodeficiency virus-infected mononuclear phagocytes: modulation of innate immunity and implications for neurological disease

1 reference

12 December 2020

Histone deacetylase inhibitors impair innate immune responses to Toll-like receptor agonists and to infection

1 reference

12 December 2020

A proteomic perspective of inbuilt viral protein regulation: pUL46 tegument protein is targeted for degradation by ICP0 during herpes simplex virus type 1 infection

1 reference

12 December 2020

Mapping the phosphoproteome of influenza A and B viruses by mass spectrometry

1 reference

12 December 2020

Association of vaccinia virus fusion regulatory proteins with the multicomponent entry/fusion complex

1 reference

12 December 2020

Glycoproteins gE and gI are required for efficient KIF1A-dependent anterograde axonal transport of alphaherpesvirus particles in neurons.

1 reference

12 December 2020

A Controlled Trial of Ganciclovir to Prevent Cytomegalovirus Disease after Heart Transplantation

1 reference

12 December 2020

Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

1 reference

12 December 2020

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

1 reference

12 December 2020

Structure of complex viruses and virus-infected cells by electron cryo tomography

1 reference

12 December 2020

LRP1 controls intracellular cholesterol storage and fatty acid synthesis through modulation of Wnt signaling

1 reference

12 December 2020

Identification of proteins associated with murine cytomegalovirus virions

1 reference

12 December 2020

Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments

1 reference

12 December 2020

Proteomic characterization of pseudorabies virus extracellular virions

1 reference

12 December 2020

Identification of structural proteins of channel catfish virus by mass spectrometry

1 reference

12 December 2020

VirusMINT: a viral protein interaction database

1 reference

12 December 2020

Probing the biophysical interplay between a viral genome and its capsid

1 reference

12 December 2020

Mechanisms of cytomegalovirus-accelerated vascular disease: induction of paracrine factors that promote angiogenesis and wound healing

1 reference

12 December 2020

Vaccinia virus proteome: identification of proteins in vaccinia virus intracellular mature virion particles

1 reference

12 December 2020

Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production

1 reference

12 December 2020

Kinesin-3 mediates axonal sorting and directional transport of alphaherpesvirus particles in neurons

1 reference

12 December 2020

SAINT: probabilistic scoring of affinity purification-mass spectrometry data

1 reference

12 December 2020

ViralZone: a knowledge resource to understand virus diversity

1 reference

12 December 2020

Herpes simplex virus 1 infection induces activation and subsequent inhibition of the IFI16 and NLRP3 inflammasomes

1 reference

12 December 2020

A generic protein purification method for protein complex characterization and proteome exploration

1 reference

12 December 2020

Role for human immunodeficiency virus type 1 membrane cholesterol in viral internalization

1 reference

12 December 2020

The product of the Herpes simplex virus 1 UL7 gene interacts with a mitochondrial protein, adenine nucleotide translocator 2

1 reference

12 December 2020

Host factors associated with the Sindbis virus RNA-dependent RNA polymerase: role for G3BP1 and G3BP2 in virus replication

1 reference

12 December 2020

Kaposi's sarcoma-associated herpesvirus interacts with EphrinA2 receptor to amplify signaling essential for productive infection

1 reference

12 December 2020

Identification of RNA-protein interaction networks involved in the norovirus life cycle

1 reference

12 December 2020

Herpes simplex virus 1 ICP4 forms complexes with TFIID and mediator in virus-infected cells

1 reference

12 December 2020

Large-scale production and structural and biophysical characterizations of the human hepatitis B virus polymerase

1 reference

12 December 2020

10.1146/ANNUREV-VIROLOGY-031413-085527

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

13 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json

13 May 2020

PubMed publication ID

26958735

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6889812&resulttype=core&format=json