GAM: a web-service for integrated transcriptional and metabolic network analysis. (Q38776754)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

title

GAM: a web-service for integrated transcriptional and metabolic network analysis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

1 reference

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Emma E. Vincent

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

8

Maxim N Artyomov

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

7

Edward J Pearce

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

author name string

Alexander A Loboda

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Abhishek K Jha

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Edward M Driggers

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Russell G Jones

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

language of work or name

English

0 references

publication date

20 April 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

volume

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

issue

W1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

page(s)

W194-200

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

2 April 2020

copyright license

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4987878

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Aerobic glycolysis tunes YAP/TAZ transcriptional activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Network integration of parallel metabolic and transcriptional data reveals metabolic modules that regulate macrophage polarization

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

limma powers differential expression analyses for RNA-sequencing and microarray studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Integrative study of Arabidopsis thaliana metabolomic and transcriptomic data with the interactive MarVis-Graph software

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Untargeted LC-MS metabolomics of bronchoalveolar lavage fluid differentiates acute respiratory distress syndrome from health.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Integration of expression data in genome-scale metabolic network reconstructions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Glucose-independent glutamine metabolism via TCA cycling for proliferation and survival in B cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

HMDB: the Human Metabolome Database

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Systems biotechnology for strain improvement

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Glucose deprivation induces mitochondrial dysfunction and oxidative stress in PC12 cell line.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Discovering regulatory and signalling circuits in molecular interaction networks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

KEGG: kyoto encyclopedia of genes and genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Mitochondrial Phosphoenolpyruvate Carboxykinase Regulates Metabolic Adaptation and Enables Glucose-Independent Tumor Growth.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web content

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987878

Global dynamic optimization approach to predict activation in metabolic pathways

31 August 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW266

Modeling of leishmaniasis infection dynamics: novel application to the design of effective therapies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW266

Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW266

Robustness and accuracy of functional modules in integrated network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW266

21 January 2018

Identifiers

DOI

10.1093/NAR/GKW266

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/SergushichevLJV16

2 April 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

PubMed publication ID

27098040

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27098040%20AND%20SRC:MED&resulttype=core&format=json