Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9. (Q38805040)

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scientific article published on 11 January 2016

Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9

Language	Label	Description	Also known as
English	Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9.	scientific article published on 11 January 2016	Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9

Statements

scholarly article

1 reference

Europe PubMed Central

6 September 2017

Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9. (English)

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Europe PubMed Central

6 September 2017

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9

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Europe PubMed Central

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10 June 2020

1

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10 June 2020

7

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10 June 2020

author name string

Rui Lopes

2

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10 June 2020

Alejandro P Ugalde

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10 June 2020

Ekaterina Nevedomskaya

4

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10 June 2020

Ruiqi Han

5

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10 June 2020

Ksenia Myacheva

6

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10 June 2020

Ran Elkon

8

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10 June 2020

publication date

11 January 2016

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Europe PubMed Central

6 September 2017

Nature Biotechnology

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10 June 2020

34

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2

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10 June 2020

192-198

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10 June 2020

describes a project that uses

CRISPR-Cas method

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based on heuristic

inferred from title

https://scigraph.springernature.com/pub.10.1038/nbt.3450

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HTSeq--a Python framework to work with high-throughput sequencing data

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genetic screen implicates miRNA-372 and miRNA-373 as oncogenes in testicular germ cell tumors

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fast gapped-read alignment with Bowtie 2

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cyclin D1 in breast cancer pathogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PROMO: detection of known transcription regulatory elements using species-tailored searches

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Super-enhancers delineate disease-associated regulatory nodes in T cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mechanisms behind the therapeutic activity of BET bromodomain inhibition

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Uniform, optimal signal processing of mapped deep-sequencing data

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

WAF1, a potential mediator of p53 tumor suppression

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An oestrogen-receptor-α-bound human chromatin interactome

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Parallel profiling of the transcriptome, cistrome, and epigenome in the cellular response to ionizing radiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Engineered CRISPR-Cas9 nucleases with altered PAM specificities

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic screens in human cells using the CRISPR-Cas9 system

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of chromosome domains in shaping the functional genome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of genome-wide p53-binding sites upon stress response.

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Model-based analysis of ChIP-Seq (MACS)

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Widespread transcription at neuronal activity-regulated enhancers

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

p53 mutations in cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional annotation of native enhancers with a Cas9-histone demethylase fusion.

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

eRNAs are required for p53-dependent enhancer activity and gene transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A public genome-scale lentiviral expression library of human ORFs

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct Initiation and Maintenance Mechanisms Cooperate to Induce G1 Cell Cycle Arrest in Response to DNA Damage

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-scale CRISPR-Cas9 knockout screening in human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Can predictive biomarkers in breast cancer guide adjuvant endocrine therapy?

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BRD7 is a candidate tumour suppressor gene required for p53 function

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A senescence program controlled by p53 and p16INK4a contributes to the outcome of cancer therapy

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vigilance and validation: Keys to success in RNAi screening

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved vectors and genome-wide libraries for CRISPR screening

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA-guided human genome engineering via Cas9

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct p53 genomic binding patterns in normal and cancer-derived human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/26751173

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1038/NBT.3450

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26751173%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Dimensions Publication ID

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1 reference

Europe PubMed Central

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10 June 2020

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