Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis. (Q38875037)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28344865%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis (English)

1 reference

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14 March 2020

1

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14 March 2020

Giuseppe Curigliano

7

1 reference

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14 March 2020

Lance Miller

14

1 reference

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14 March 2020

8

Barbara Seliger

1 reference

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14 March 2020

Lucia Gemma Delogu

11

0 references

Francesco Marincola

15

object named as

Francesco M Marincola

1 reference

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14 March 2020

author name string

Ines Simeone

2

1 reference

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14 March 2020

Samreen Anjum

3

1 reference

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14 March 2020

Younes Mokrab

4

1 reference

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14 March 2020

François Bertucci

5

1 reference

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14 March 2020

Pascal Finetti

6

1 reference

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14 March 2020

Luigi Cerulo

9

1 reference

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14 March 2020

Sara Tomei

10

1 reference

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14 March 2020

Cristina Maccalli

12

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14 March 2020

Ena Wang

13

1 reference

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14 March 2020

Michele Ceccarelli

16

1 reference

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14 March 2020

Davide Bedognetti

17

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14 March 2020

publication date

6 February 2017

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14 March 2020

1 reference

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14 March 2020

volume

6

1 reference

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14 March 2020

issue

2

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14 March 2020

page(s)

e1253654

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Creative Commons Attribution-NonCommercial 3.0 Unported

14 March 2020

copyright license

start time

1 February 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

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9 September 2017

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Mutational profiles in triple-negative breast cancer defined by ultradeep multigene sequencing show high rates of PI3K pathway alterations and clinically relevant entity subgroup specific differences

9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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Prognostic value of tumor-infiltrating lymphocytes in triple-negative breast cancers from two phase III randomized adjuvant breast cancer trials: ECOG 2197 and ECOG 1199.

9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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The continuum of cancer immunosurveillance: prognostic, predictive, and mechanistic signatures

9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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Molecular signatures mostly associated with NK cells are predictive of relapse free survival in breast cancer patients.

9 September 2017

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Interactions between immunity, proliferation and molecular subtype in breast cancer prognosis

9 September 2017

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Role of chemokines and chemokine receptors in shaping the effector phase of the antitumor immune response.

9 September 2017

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Comprehensive molecular portraits of human breast tumours

9 September 2017

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Whole-genome analysis informs breast cancer response to aromatase inhibition

9 September 2017

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The stable traits of melanoma genetics: an alternate approach to target discovery

9 September 2017

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Role of interleukin 10 transcriptional regulation in inflammation and autoimmune disease

9 September 2017

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The immune contexture in human tumours: impact on clinical outcome

9 September 2017

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9 September 2017

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Molecular basis of triple negative breast cancer and implications for therapy

9 September 2017

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9 September 2017

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Gene expression profiling in acute allograft rejection: challenging the immunologic constant of rejection hypothesis

9 September 2017

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Molecular insights on the peripheral and intratumoral effects of systemic high-dose rIL-2 (aldesleukin) administration for the treatment of metastatic melanoma

9 September 2017

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Regression of melanoma metastases after immunotherapy is associated with activation of antigen presentation and interferon-mediated rejection genes

9 September 2017

1 reference

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9 September 2017

1 reference

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A signature of immune function genes associated with recurrence-free survival in breast cancer patients

9 September 2017

1 reference

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Enrichment map: a network-based method for gene-set enrichment visualization and interpretation

9 September 2017

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Phenotypic and molecular characterization of the claudin-low intrinsic subtype of breast cancer

9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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STATs in cancer inflammation and immunity: a leading role for STAT3

9 September 2017

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Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1

9 September 2017

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Increased T-bet+ cytotoxic effectors and type I interferon-mediated processes in chronic graft-versus-host disease of the oral mucosa

9 September 2017

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The immunologic constant of rejection

9 September 2017

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Tumour immunity: effector response to tumour and role of the microenvironment

9 September 2017

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9 September 2017

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9 September 2017

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Patterns of somatic mutation in human cancer genomes

9 September 2017

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MAPK phosphatases--regulating the immune response

9 September 2017

1 reference

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Sequential gene profiling of basal cell carcinomas treated with imiquimod in a placebo-controlled study defines the requirements for tissue rejection

9 September 2017

1 reference

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The MEK/ERK cascade: from signaling specificity to diverse functions

9 September 2017

1 reference

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Type, density, and location of immune cells within human colorectal tumors predict clinical outcome

9 September 2017

1 reference

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Concordance among gene-expression-based predictors for breast cancer

9 September 2017

1 reference

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The molecular portraits of breast tumors are conserved across microarray platforms

9 September 2017

1 reference

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Adjusting batch effects in microarray expression data using empirical Bayes methods

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Bioconductor: open software development for computational biology and bioinformatics

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Counting on mitogen-activated protein kinases--ERKs 3, 4, 5, 6, 7 and 8.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Gene-expression profiling of the response of peripheral blood mononuclear cells and melanoma metastases to systemic IL-2 administration

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Prospective molecular profiling of melanoma metastases suggests classifiers of immune responsiveness.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Molecular classification of cutaneous malignant melanoma by gene expression profiling

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

BRAF inhibition is associated with enhanced melanoma antigen expression and a more favorable tumor microenvironment in patients with metastatic melanoma.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Prognostic and predictive value of NanoString-based immune-related gene signatures in a neoadjuvant setting of triple-negative breast cancer: relationship to tumor-infiltrating lymphocytes

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Tumor-infiltrating lymphocytes and response to neoadjuvant chemotherapy with or without carboplatin in human epidermal growth factor receptor 2-positive and triple-negative primary breast cancers.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Cancer cell-autonomous contribution of type I interferon signaling to the efficacy of chemotherapy

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Tumor infiltrating lymphocytes are prognostic in triple negative breast cancer and predictive for trastuzumab benefit in early breast cancer: results from the FinHER trial

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

MAP3K1: Genomic Alterations in Cancer and Function in Promoting Cell Survival or Apoptosis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Up-regulation of PD-L1, IDO, and T(regs) in the melanoma tumor microenvironment is driven by CD8(+) T cells

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Prediction of response to anticancer immunotherapy using gene signatures

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Predictive gene signature in MAGE-A3 antigen-specific cancer immunotherapy.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Increased lymphocytic infiltration in breast cancer correlated with molecular subtypes and HER2 gene amplification

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Prognostic and predictive value of tumor-infiltrating lymphocytes in a phase III randomized adjuvant breast cancer trial in node-positive breast cancer comparing the addition of docetaxel to doxorubicin with doxorubicin-based chemotherapy: BIG 02-98

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Gene modules and response to neoadjuvant chemotherapy in breast cancer subtypes: a pooled analysis.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Role of mitogen-activated protein kinase and PI3K pathways in the regulation of IL-12-family cytokines in dendritic cells and the generation of T H-responses.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Tumor-associated lymphocytes as an independent predictor of response to neoadjuvant chemotherapy in breast cancer.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Clinical Impact of Different Classes of Infiltrating T Cytotoxic and Helper Cells (Th1, Th2, Treg, Th17) in Patients with Colorectal Cancer

22 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1080%2F2162402X.2016.1253654

Biological Processes Associated with Breast Cancer Clinical Outcome Depend on the Molecular Subtypes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1080%2F2162402X.2016.1253654

An immune-active tumor microenvironment favors clinical response to ipilimumab

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5353940

Analysis of independent microarray datasets of renal biopsies identifies a robust transcript signature of acute allograft rejection

4 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28344865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Host Antitumor Immunity Plays a Role in the Survival of Patients With Newly Diagnosed Triple-Negative Breast Cancer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28344865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1080/2162402X.2016.1253654

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28344865%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28344865%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

PubMed publication ID

28344865

1 reference