Conservation of trans-acting circuitry during mammalian regulatory evolution (Q39843784)

15 September 2017

Conservation of trans-acting circuitry during mammalian regulatory evolution (English)

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John Stamatoyannopoulos

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object named as

John A Stamatoyannopoulos

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Elhanan Borenstein

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Andrew B Stergachis

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Shane Neph

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Alex P Reynolds

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Miaohua Zhang

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Rachel Byron

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Theresa Canfield

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Sandra Stelhing-Sun

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Kristen Lee

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Robert E Thurman

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Shinny Vong

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Daniel Bates

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Fidencio Neri

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Morgan Diegel

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Erika Giste

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Douglas Dunn

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Jeff Vierstra

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R Scott Hansen

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Audra K Johnson

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Peter J Sabo

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Matthew S Wilken

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Thomas A Reh

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Piper M Treuting

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Rajinder Kaul

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Mark Groudine

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M A Bender

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language of work or name

English

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publication date

1 November 2014

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515

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7527

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365-370

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https://scigraph.springernature.com/pub.10.1038/nature13972

15 September 2017

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22 September 2017

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Probing DNA shape and methylation state on a genomic scale with DNase I.

22 September 2017

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Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification

22 September 2017

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22 September 2017

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22 September 2017

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22 September 2017

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22 September 2017

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22 September 2017

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Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

22 September 2017

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Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays

22 September 2017

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22 September 2017

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22 September 2017

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Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

22 September 2017

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22 September 2017

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JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

22 September 2017

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Quantifying similarity between motifs

22 September 2017

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Superfamilies of evolved and designed networks.

22 September 2017

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Matrix2png: a utility for visualizing matrix data

22 September 2017

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Initial sequencing and comparative analysis of the mouse genome

22 September 2017

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Network motifs: simple building blocks of complex networks

22 September 2017

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Evidence for stabilizing selection in a eukaryotic enhancer element.

22 September 2017

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22 September 2017

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22 September 2017

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Circuitry and dynamics of human transcription factor regulatory networks

22 September 2017

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17 June 2018

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20 August 2018

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Evolutionary changes in cis and trans gene regulation

20 August 2018

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Conservation of RET regulatory function from human to zebrafish without sequence similarity

20 August 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/25409825

12 December 2020

inferred from PubMed ID database lookup

KRAB zinc finger proteins: an analysis of the molecular mechanisms governing their increase in numbers and complexity during evolution

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7 January 2021

DNAase footprinting a simple method for the detection of protein-DNA binding specificity

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7 January 2021

NF-E2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human beta-globin locus control region.

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7 January 2021

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

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7 January 2021

DNase footprint signatures are dictated by factor dynamics and DNA sequence

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7 January 2021

Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data

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The human mitochondrial transcriptome

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Amylases in the Human Vagina

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Identifiers

DOI

10.1038/NATURE13972

1 reference

15 September 2017

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15 September 2017

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