The chaperone-like activity of the hepatitis C virus IRES and CRE elements regulates genome dimerization (Q40320503)

19 September 2017

The chaperone-like activity of the hepatitis C virus IRES and CRE elements regulates genome dimerization (English)

1 reference

19 September 2017

0 references

1 reference

Alfredo Berzal-Herranz

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28233845%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

author name string

Cristina Romero-López

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28233845%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Alicia Barroso-delJesus

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28233845%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

language of work or name

English

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publication date

24 February 2017

1 reference

19 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28233845%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28233845%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

page(s)

43415

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28233845%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

13 June 2020

copyright license

start time

24 February 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/srep43415

0 references

cites work

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Identification of novel RNA secondary structures within the hepatitis C virus genome reveals a cooperative involvement in genome packaging

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The Coding Region of the HCV Genome Contains a Network of Regulatory RNA Structures

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Involvement of the 3' Untranslated Region in Encapsidation of the Hepatitis C Virus

22 September 2017

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LOOP IIId of the HCV IRES is essential for the structural rearrangement of the 40S-HCV IRES complex

22 September 2017

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22 September 2017

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Mutations of the SL2 dimerization sequence of the hepatitis C genome abrogate viral replication

22 September 2017

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Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3' X-tail

22 September 2017

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A magnesium-induced RNA conformational switch at the internal ribosome entry site of hepatitis C virus genome visualized by atomic force microscopy

22 September 2017

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22 September 2017

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Hepatitis-C-virus-like internal ribosome entry sites displace eIF3 to gain access to the 40S subunit

22 September 2017

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22 September 2017

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Hepatitis C virus 3'UTR regulates viral translation through direct interactions with the host translation machinery

22 September 2017

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Two RNA-binding motifs in eIF3 direct HCV IRES-dependent translation

22 September 2017

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Direct evidence for RNA-RNA interactions at the 3' end of the Hepatitis C virus genome using surface plasmon resonance

22 September 2017

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QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis

22 September 2017

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A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication.

22 September 2017

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Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning

22 September 2017

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The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation.

22 September 2017

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The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit

22 September 2017

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Molecular crowding stabilizes folded RNA structure by the excluded volume effect

22 September 2017

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Hepatitis C virus genomic RNA dimerization is mediated via a kissing complex intermediate

22 September 2017

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Influence of the hepatitis C virus 3'-untranslated region on IRES-dependent and cap-dependent translation initiation.

22 September 2017

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A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome

22 September 2017

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Conserved functional domains and a novel tertiary interaction near the pseudoknot drive translational activity of hepatitis C virus and hepatitis C virus-like internal ribosome entry sites

22 September 2017

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IGF2BP1 enhances HCV IRES-mediated translation initiation via the 3'UTR

22 September 2017

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Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses

22 September 2017

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A Hepatitis C Virus cis-Acting Replication Element Forms a Long-Range RNA-RNA Interaction with Upstream RNA Sequences in NS5B

22 September 2017

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Nucleocapsid protein-mediated maturation of dimer initiation complex of full-length SL1 stemloop of HIV-1: sequence effects and mechanism of RNA refolding

22 September 2017

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Analysis of hepatitis C virus RNA dimerization and core-RNA interactions

22 September 2017

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Interfering with hepatitis C virus IRES activity using RNA molecules identified by a novel in vitro selection method.

22 September 2017

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RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

22 September 2017

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Kissing-loop interaction in the 3' end of the hepatitis C virus genome essential for RNA replication

22 September 2017

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Riboproteomics of the hepatitis C virus internal ribosomal entry site

22 September 2017

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cis-acting RNA signals in the NS5B C-terminal coding sequence of the hepatitis C virus genome

22 September 2017

1 reference

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Detailed mapping of RNA secondary structures in core and NS5B-encoding region sequences of hepatitis C virus by RNase cleavage and novel bioinformatic prediction methods.

22 September 2017

1 reference

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A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication

22 September 2017

1 reference

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Domains on the hepatitis C virus internal ribosome entry site for 40s subunit binding

22 September 2017

1 reference

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Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Sequences in the 5' nontranslated region of hepatitis C virus required for RNA replication.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Mechanism of ribosome recruitment by hepatitis C IRES RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation and IRES folding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Hepatitis C virus-encoded enzymatic activities and conserved RNA elements in the 3' nontranslated region are essential for virus replication in vivo

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

In vivo analysis of the 3' untranslated region of the hepatitis C virus after in vitro mutagenesis of an infectious cDNA clone

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

The 3'-untranslated region of hepatitis C virus RNA enhances translation from an internal ribosomal entry site

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Specific interaction of eukaryotic translation initiation factor 3 with the 5' nontranslated regions of hepatitis C virus and classical swine fever virus RNAs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Determination of the secondary structure of and cellular protein binding to the 3'-untranslated region of the hepatitis C virus RNA genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Secondary structure determination of the conserved 98-base sequence at the 3' terminus of hepatitis C virus genome RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Unique features of internal initiation of hepatitis C virus RNA translation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Structure of the 3' terminus of the hepatitis C virus genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Translation of human hepatitis C virus RNA in cultured cells is mediated by an internal ribosome-binding mechanism

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Biosynthesis and biochemical properties of the hepatitis C virus core protein

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5' noncoding region

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Structure and organization of the hepatitis C virus genome isolated from human carriers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Gene mapping of the putative structural region of the hepatitis C virus genome by in vitro processing analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Internal ribosome entry site within hepatitis C virus RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Conserved RNA secondary structures and long-range interactions in hepatitis C viruses

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

The hepatitis C virus Core protein is a potent nucleic acid chaperone that directs dimerization of the viral (+) strand RNA in vitro

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

End-to-end crosstalk within the hepatitis C virus genome mediates the conformational switch of the 3'X-tail region

25 September 2017

1 reference

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Hepatitis C virus RNA: molecular switches mediated by long-range RNA-RNA interactions?

15 June 2018

1 reference

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Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity.

15 June 2018

1 reference

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Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

Modification interference analysis of reactions using RNA substrates

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

The folding of the hepatitis C virus internal ribosome entry site depends on the 3'-end of the viral genome

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

The HIV-1(Lai) RNA dimerization. Thermodynamic parameters associated with the transition from the kissing complex to the extended dimer.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5324077

20 August 2018

Identifiers

DOI

10.1038/SREP43415

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28233845%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28233845%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference