A structural-informatics approach for mining beta-sheets: locating sheets in intermediate-resolution density maps (Q40565201)

21 September 2017

title

A structural-informatics approach for mining beta-sheets: locating sheets in intermediate-resolution density maps (English)

1 reference

21 September 2017

0 references

Yifei Kong

1

1 reference

21 September 2017

Jianpeng Ma

series ordinal

2

1 reference

21 September 2017

language of work or name

English

0 references

publication date

1 September 2003

1 reference

Journal of Molecular Biology

21 September 2017

published in

1 reference

21 September 2017

volume

332

1 reference

21 September 2017

issue

2

1 reference

21 September 2017

page(s)

399-413

1 reference

Macromolecular assemblages. Sizing things up

21 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Cryo-Electron Microscopy Reveals the Functional Organization of an Enveloped Virus, Semliki Forest Virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Seeing the herpesvirus capsid at 8.5 A

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Direct evidence for the size and conformational variability of the pyruvate dehydrogenase complex revealed by three-dimensional electron microscopy. The "breathing" core and its functional relationship to protein dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Structure of dengue virus: implications for flavivirus organization, maturation, and fusion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Microtubule structure at 8 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Structure of the AAA ATPase p97

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

A 9 A resolution X-ray crystallographic map of the large ribosomal subunit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Bridging the information gap: computational tools for intermediate resolution structure interpretation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

A study of combined structure/sequence profiles.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Ideas of order for amyloid fibril structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

The protofilament structure of insulin amyloid fibrils

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Refined crystal structure of carboxypeptidase A at 1.54 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Three-dimensional structure of p21 in the active conformation and analysis of an oncogenic mutant

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

A flavodoxin that is required for enzyme activation: the structure of oxidized flavodoxin from Escherichia coli at 1.8 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Stabilization of GroEL minichaperones by core and surface mutations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

The structure and stability of an HLA-A*0201/octameric tax peptide complex with an empty conserved peptide-N-terminal binding site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Structure of a triclinic ternary complex of horse liver alcohol dehydrogenase at 2.9 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Crystallographic analysis of the MoFe protein of nitrogenase from a nifV mutant of Klebsiella pneumoniae identifies citrate as a ligand to the molybdenum of iron molybdenum cofactor (FeMoco)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

An unlikely sugar substrate site in the 1.65 A structure of the human aldose reductase holoenzyme implicated in diabetic complications

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

A molecular mechanism for the phosphorylation-dependent regulation of heterotrimeric G proteins by phosducin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

EMAN: semiautomated software for high-resolution single-particle reconstructions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

The structure of the R-type straight flagellar filament of Salmonella at 9 A resolution by electron cryomicroscopy.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Prediction of structure and function of G protein-coupled receptors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Protein structure prediction and structural genomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

De Novo Prediction of Three-dimensional Structures for Major Protein Families

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Contact order and ab initio protein structure prediction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Distributions of beta sheets in proteins with application to structure prediction.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

The directional atomic solvation energy: an atom-based potential for the assignment of protein sequences to known folds.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Prospects for ab initio protein structural genomics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Protein fold recognition using sequence-derived predictions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Structural genomics: A pipeline for providing structures for the biologist

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Direct visualisation of the beta-sheet structure of synthetic Alzheimer's amyloid

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Amyloid-fibril formation. Proposed mechanisms and relevance to conformational disease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

Knowledge-based protein secondary structure assignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

The use of molecular-replacement phases for the refinement of the human rhinovirus 14 structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900859-3

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/S0022-2836(03)00859-3

1 reference

21 September 2017

1 reference