Chemical and computer probing of RNA structure. (Q40998340)

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16 October 2019

review article

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title

Chemical and computer probing of RNA structure (English)

1 reference

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16 October 2019

author name string

Kolchanov NA

1

1 reference

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16 October 2019

Titov II

2

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16 October 2019

Vlassova IE

3

1 reference

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16 October 2019

Vlassov VV

4

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16 October 2019

publication date

1 January 1996

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Progress in Molecular Biology and Translational Science

16 October 2019

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8650302%20AND%20SRC:MED&resulttype=core&format=json

16 October 2019

volume

53

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16 October 2019

page(s)

131-196

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Nucleation, rapid folding, and globular intrachain regions in proteins

16 October 2019

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A kinetic model of RNA folding

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Mapping the active site of ribonuclease P RNA using a substrate containing a photoaffinity agent.

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Conformation of an RNA pseudoknot

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Prediction of pairing schemes in RNA molecules-loop contributions and energy of wobble and non-wobble pairs

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Structure of ribosomal RNA

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RNA structure prediction

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An algorithm for comparing multiple RNA secondary structures

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A pseudoknotted RNA oligonucleotide

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Specific fragmentation of tRNA and rRNA at a 7-methylguanine residue in the presence of methylated carrier RNA

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Detailed molecular model for transfer ribonucleic acid

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A nuclease specific for heat-denatured DNA in isolated from a product of Aspergillus oryzae.

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tRNA-like structures of plant viral RNAs: conformational requirements for adenylation and aminoacylation.

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Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region

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A direct measurement of the unzippering rate of a nucleic acid double helix.

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Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement

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Local stability of DNA and RNA secondary structure and its relation to biological functions

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Estimation of Secondary Structure in Ribonucleic Acids

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Improved free-energy parameters for predictions of RNA duplex stability

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Crystallographic refinement of yeast aspartic acid transfer RNA

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Secondary structure of 16S ribosomal RNA.

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Slow relaxational processes in the melting of linear biopolymers: a theory and its application to nucleic acids

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Isolation of highly purified ribonuclease from cobra (Naja oxiana) venom

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Properties of an in vitro selected Pb2+ cleavage motif

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12 December 2020

Defining the inside and outside of a catalytic RNA molecule

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3-D graphics modelling of the tRNA-like 3'-end of turnip yellow mosaic virus RNA: structural and functional implications

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Statistics of RNA secondary structures

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Fast algorithm for predicting the secondary structure of single-stranded RNA

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12 December 2020

Molecular rulers for measuring RNA structure: sites of crosslinking in chlorambucilyl-phenylalanyl-tRNAPhe (yeast) and chlorambucilyl-pentadecaprolyl-phenylalanyl-tRNAPhe (yeast) intramolecularly crosslinked in aqueous solution

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12 December 2020

Chemical probes for higher-order structure in RNA

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Unusual mRNA pseudoknot structure is recognized by a protein translational repressor

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12 December 2020

An ultraviolet light-induced crosslink in yeast tRNA(Phe)

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12 December 2020

Glassy kinetic barriers between conformational substates in RNA

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12 December 2020

Template-determined, variable rate of RNA chain elongation

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12 December 2020

Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe

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Base-pair probability profiles of RNA secondary structures.

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The equilibrium partition function and base pair binding probabilities for RNA secondary structure

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7 January 2021

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7 January 2021

Chemical probing of conformation in large RNA molecules. Analysis of 16 S ribosomal RNA using diethylpyrocarbonate

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7 January 2021

Selective chemical modifications of uridine and pseudouridine in polynucleotides and their effect on the specificities of ribonuclease and phosphodiesterases

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7 January 2021

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7 January 2021

Solution structure of the 3'-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs

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7 January 2021

Solvent accessible surface area and excluded volume in proteins. Analytical equations for overlapping spheres and implications for the hydrophobic effect

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7 January 2021

tRNA tertiary structure in solution as probed by the photochemically induced 8-13 cross-link

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7 January 2021

Structure of the Escherichia coli 16 S ribosomal RNA. Psoralen crosslinks and N-acetyl-N'-(p-glyoxylylbenzoyl)cystamine crosslinks detected by electron microscopy

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7 January 2021

The 9S RNA precursor of Escherichia coli 5S RNA has three structural domains: implications for processing

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7 January 2021

A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

Computer method for predicting the secondary structure of single-stranded RNA

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7 January 2021

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

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7 January 2021

RNA secondary structures and their prediction

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Efficient algorithms for folding and comparing nucleic acid sequences

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7 January 2021

A dynamic programming algorithm for finding alternative RNA secondary structures

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7 January 2021

An accelerated algorithm for calculating the secondary structure of single stranded RNAs

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7 January 2021

Some simple computational methods to improve the folding of large RNAs

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7 January 2021

Structural analysis by energy dot plot of a large mRNA.

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7 January 2021

Effect of antitumour polysaccharides on the higher structure of serum protein.

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7 January 2021

Are there pathways for protein folding?

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7 January 2021

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7 January 2021

Prediction of RNA secondary structure, including pseudoknotting, by computer simulation

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7 January 2021

The computer simulation of RNA folding involving pseudoknot formation

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7 January 2021

Excluded volume effects on the kinetic assembling of a structural motif for RNA catalysis

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7 January 2021

Prediction of common folding structures of homologous RNAs

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7 January 2021

Detection of common motifs in RNA secondary structures

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7 January 2021

The tRNA-like structure at the 3' terminus of turnip yellow mosaic virus RNA. Differences and similarities with canonical tRNA

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7 January 2021

A new principle of RNA folding based on pseudoknotting

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7 January 2021

Five pseudoknots are present at the 204 nucleotides long 3' noncoding region of tobacco mosaic virus RNA.

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7 January 2021

Model for the three-dimensional folding of 16 S ribosomal RNA

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7 January 2021

Autogenous regulatory site on the bacteriophage T4 gene 32 messenger RNA.

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7 January 2021

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